EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16
Identity = 59/187 (31.55%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            LP+ ++E +I             G TG GK+TQ+ Q +     ++       I VTQP              E G   G+  GY++RFE         I + T GVLLR++ +   +   S +I+DE HER +NTD LL +++ +V     +++I++ SAT+D     ++F NCP + V G+ YPV+
Sbjct:  388 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQ 571          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.217e-16
Identity = 58/187 (31.02%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617
            LP+ ++E +I             G TG GK+TQ+ Q +     ++       I VTQP              E G   G+  GY++RFE         I + T GVLLR++ +   +   S +I+DE HER +NTD LL +++ +V     +++I++ SAT+D     ++F NCP + V G+ +PV+
Sbjct:  385 LPVKKFESEILEAISQNPVVIIRGATGCGKTTQVPQFILDDCIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTFPVQ 568          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_CAEEL (Probable ATP-dependent RNA helicase A OS=Caenorhabditis elegans GN=rha-1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 60/201 (29.85%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQIL------HRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN------CPTLNVPGKLYPVEILHSKE 635
            LP+ QY E I             GETG GKSTQ++Q L      + +G + + +  V+QP              E G  +GE  GY +RF+  T      I + T GVLLR  +    L   S +I+DE HER ++TD +L +++ +++     L++++ SAT+D +  + FFS+       P + + G+ +PV+  + ++
Sbjct:  381 LPVAQYRENIVQTVAENRVTLIKGETGCGKSTQVAQFLLESFLENSNGASFNAV--VSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLR--MMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRD-LRVVLMSATIDTDLFTNFFSSIPDVGPTPVITMHGRTFPVQSFYLED 576          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: TDRD9_RAT (Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  150 GSGKSTQLSQILHRHGYTKSGI--IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEI---LHSKERXY 644
            GSGKSTQL Q +  H   +S    I VTQP             +E    LG  VGY +  E   +E T + Y+T GVLL++I+S   L  ++ + +DE HER+   D LL +V++L+   +  +K+++ SAT++ ++ + +F+  P  N     Y  E+    H+ E+ Y
Sbjct:    4 GSGKSTQLPQYVLDHYTQRSAFCNIVVTQPRKIGASSIARWISKERSWTLGGLVGYQVGLEKTATEDTRLIYMTTGVLLQKIVSAKSLMEFTHVFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVILMSATINCKQFADYFA-VPVQNKMNPAYVFEVEGKPHTIEQYY 172          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: TDRD9_MOUSE (Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.227e-15
Identity = 57/181 (31.49%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  150 GSGKSTQLSQILHRHGYTKSGI--IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ--HLY 680
            GSGKSTQL Q +  H   +S    I VTQP             +E    LG  VGY +  E   +E T + Y+T GVLL++I+S   L  ++ I +DE HER+   D LL +V++L+   +  +K+++ SAT++ ++ + +F+    + V  K+ P  +   + + ++  E  L    H+Y
Sbjct:    4 GSGKSTQLPQYVLDHYTQRSAFCNIVVTQPRKIGASSIARWISKERSWTLGGLVGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLMEFTHIFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVVLMSATINCKQFADYFA----VPVQNKMNPAYVFEVEGKPHAIEEYYLNDLGHIY 180          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 3
Query:   39 SKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 569
            S P  + + A+LPI+  + +I            +GE G GKS+Q+ Q L          I  TQP             +     LG E+GY I      +E + I + T GVLL E+L    +   Y VIILDE HERS+ +D++L  VK+ + ++ + L++++ SAT D  +   +F
Sbjct:   15 SLPLPSSNFASLPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAP---ILCTQPRRFAVVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVIILDEVHERSVESDLVLVCVKQFL-MKNNDLRVVLMSATADITRYRDYF 188          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: C3H4_ORYSJ (Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 53/183 (28.96%), Postives = 86/183 (46.99%), Query Frame = 3
Query:   33 ESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAI---RFEDRTSERTLIKYLTDGVLLREILSNPDLS-PYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 569
            E  +  V  + A L +     KI            +G+TG GKS+ + Q L          I  TQP             +    ++GEEVGY I      +  S+R+ I + T GV+L ++      +  Y VIILDE HERS+ +D++L  VK+ + ++ + L++++ SAT D  +   +F
Sbjct:    5 EEKRVGVGEARAPLAVEALRGKIVEKVKGNRVTLIVGDTGCGKSSMVPQFLLEENMEP---ILCTQPRRFAVVAIAQMIAESRNCQVGEEVGYHIGHSNVSNLNSKRSRIVFKTAGVVLEQMRDKGIAALNYKVIILDEIHERSVESDLVLACVKQFM-MKKNDLRLILMSATADITRYKDYF 183          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHX9_HUMAN2.472e-1631.55ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
DHX9_BOVIN4.217e-1631.02ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9... [more]
DHX9_CAEEL7.194e-1629.85Probable ATP-dependent RNA helicase A OS=Caenorhab... [more]
TDRD9_RAT9.395e-1632.94Putative ATP-dependent RNA helicase TDRD9 OS=Rattu... [more]
TDRD9_MOUSE1.227e-1531.49Putative ATP-dependent RNA helicase TDRD9 OS=Mus m... [more]
C3H31_ARATH4.364e-1331.46Zinc finger CCCH domain-containing protein 31 OS=A... [more]
C3H4_ORYSJ5.335e-1128.96Zinc finger CCCH domain-containing protein 4 OS=Or... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
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