EY753754
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4) HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16 Identity = 59/187 (31.55%), Postives = 94/187 (50.27%), Query Frame = 3 Query: 72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617 LP+ ++E +I G TG GK+TQ+ Q + ++ I VTQP E G G+ GY++RFE I + T GVLLR++ + + S +I+DE HER +NTD LL +++ +V +++I++ SAT+D ++F NCP + V G+ YPV+ Sbjct: 388 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQ 571
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.217e-16 Identity = 58/187 (31.02%), Postives = 94/187 (50.27%), Query Frame = 3 Query: 72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE 617 LP+ ++E +I G TG GK+TQ+ Q + ++ I VTQP E G G+ GY++RFE I + T GVLLR++ + + S +I+DE HER +NTD LL +++ +V +++I++ SAT+D ++F NCP + V G+ +PV+ Sbjct: 385 LPVKKFESEILEAISQNPVVIIRGATGCGKTTQVPQFILDDCIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTFPVQ 568
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX9_CAEEL (Probable ATP-dependent RNA helicase A OS=Caenorhabditis elegans GN=rha-1 PE=2 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16 Identity = 60/201 (29.85%), Postives = 101/201 (50.25%), Query Frame = 3 Query: 72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQIL------HRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN------CPTLNVPGKLYPVEILHSKE 635 LP+ QY E I GETG GKSTQ++Q L + +G + + + V+QP E G +GE GY +RF+ T I + T GVLLR + L S +I+DE HER ++TD +L +++ +++ L++++ SAT+D + + FFS+ P + + G+ +PV+ + ++ Sbjct: 381 LPVAQYRENIVQTVAENRVTLIKGETGCGKSTQVAQFLLESFLENSNGASFNAV--VSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLR--MMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRD-LRVVLMSATIDTDLFTNFFSSIPDVGPTPVITMHGRTFPVQSFYLED 576
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: TDRD9_RAT (Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16 Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 150 GSGKSTQLSQILHRHGYTKSGI--IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEI---LHSKERXY 644 GSGKSTQL Q + H +S I VTQP +E LG VGY + E +E T + Y+T GVLL++I+S L ++ + +DE HER+ D LL +V++L+ + +K+++ SAT++ ++ + +F+ P N Y E+ H+ E+ Y Sbjct: 4 GSGKSTQLPQYVLDHYTQRSAFCNIVVTQPRKIGASSIARWISKERSWTLGGLVGYQVGLEKTATEDTRLIYMTTGVLLQKIVSAKSLMEFTHVFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVILMSATINCKQFADYFA-VPVQNKMNPAYVFEVEGKPHTIEQYY 172
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: TDRD9_MOUSE (Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.227e-15 Identity = 57/181 (31.49%), Postives = 95/181 (52.49%), Query Frame = 3 Query: 150 GSGKSTQLSQILHRHGYTKSGI--IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ--HLY 680 GSGKSTQL Q + H +S I VTQP +E LG VGY + E +E T + Y+T GVLL++I+S L ++ I +DE HER+ D LL +V++L+ + +K+++ SAT++ ++ + +F+ + V K+ P + + + ++ E L H+Y Sbjct: 4 GSGKSTQLPQYVLDHYTQRSAFCNIVVTQPRKIGASSIARWISKERSWTLGGLVGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLMEFTHIFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVVLMSATINCKQFADYFA----VPVQNKMNPAYVFEVEGKPHAIEEYYLNDLGHIY 180
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13 Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 3 Query: 39 SKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 569 S P + + A+LPI+ + +I +GE G GKS+Q+ Q L I TQP + LG E+GY I +E + I + T GVLL E+L + Y VIILDE HERS+ +D++L VK+ + ++ + L++++ SAT D + +F Sbjct: 15 SLPLPSSNFASLPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAP---ILCTQPRRFAVVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVIILDEVHERSVESDLVLVCVKQFL-MKNNDLRVVLMSATADITRYRDYF 188
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: C3H4_ORYSJ (Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11 Identity = 53/183 (28.96%), Postives = 86/183 (46.99%), Query Frame = 3 Query: 33 ESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAI---RFEDRTSERTLIKYLTDGVLLREILSNPDLS-PYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 569 E + V + A L + KI +G+TG GKS+ + Q L I TQP + ++GEEVGY I + S+R+ I + T GV+L ++ + Y VIILDE HERS+ +D++L VK+ + ++ + L++++ SAT D + +F Sbjct: 5 EEKRVGVGEARAPLAVEALRGKIVEKVKGNRVTLIVGDTGCGKSSMVPQFLLEENMEP---ILCTQPRRFAVVAIAQMIAESRNCQVGEEVGYHIGHSNVSNLNSKRSRIVFKTAGVVLEQMRDKGIAALNYKVIILDEIHERSVESDLVLACVKQFM-MKKNDLRLILMSATADITRYKDYF 183 The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bpback to top |