EY693113

Overview
NameEY693113
Unique NameEY693113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.286e-27
Identity = 89/226 (39.38%), Postives = 121/226 (53.54%), Query Frame = 1
Query:   52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +  Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DH+ADPV
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.093e-27
Identity = 94/241 (39.00%), Postives = 126/241 (52.28%), Query Frame = 1
Query:    7 VRFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            +R  V++A T  +  G DRP +    S Q  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +  Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DHLADPV
Sbjct:   37 MRRTVKSAPTS-IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR----VGGGPLGE----GLDPIYPGGAFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.651e-27
Identity = 89/226 (39.38%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DH+ DPV
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.687e-27
Identity = 81/207 (39.13%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   70 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADP 687
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +   F  + Y     +  Y             + K       KE+ NGRLAMLA LG+ VQ  V G GP++N   HLADP
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIF--KSYSLPPHECGYPGRVFNPLNFAPLENKE------KELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADP 219          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 90/239 (37.66%), Postives = 124/239 (51.88%), Query Frame = 1
Query:   10 RFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            R V ++A +  +  GADRP +    S ++ SYL+G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DHLADPV
Sbjct:   40 RTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.482e-26
Identity = 89/226 (39.38%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DH+ADPV
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 95/245 (38.78%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    4 RVRFVVRAA--STPP-VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            + RF +R    S P  +  G DRP +    S+Q  SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G   PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +  Y GG+ DP               D  S  + K+KE+KNGRLAM ++ G+FVQ +VTG GP QN  DH+ADPV
Sbjct:   32 QARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCTFPELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.605e-26
Identity = 89/234 (38.03%), Postives = 122/234 (52.14%), Query Frame = 1
Query:   25 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            AAS+     GADR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMG  E  R       G +G         Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DHLADPV
Sbjct:   42 AASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG----GPLGEVVD---PLYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.254e-25
Identity = 90/242 (37.19%), Postives = 123/242 (50.83%), Query Frame = 1
Query:    4 RVRFVVRAASTPP--VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADP 687
            RV+ +   +  P   +  G+DRPL+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DHLADP
Sbjct:   33 RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VEDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
BLAST of EY693113 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.254e-25
Identity = 87/225 (38.67%), Postives = 118/225 (52.44%), Query Frame = 1
Query:   52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFFGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNPMDHLADPV 690
            GADR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMG  E  R       G +G         Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N  DHLADPV
Sbjct:   47 GADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG----GPLGEVVD---PLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 246          
The following BLAST results are available for this feature:
BLAST of EY693113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_LEMGI2.286e-2739.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI5.093e-2739.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC6.651e-2739.38Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU8.687e-2739.13Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB2_PHYPA1.135e-2637.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC1.482e-2639.38Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB215_PEA3.301e-2638.78Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_ORYSJ9.605e-2638.03Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_POLMU1.254e-2537.19Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_ORYSJ1.254e-2538.67Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-H10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693113 ID=EY693113; Name=EY693113; organism=Citrus sinensis; type=EST; length=841bp
CCACGCGTCCGCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCA
AGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACT
TGGATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCA
GACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGG
CGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTG
CACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTG
GCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTG
GGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTG
CCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGG
CAATACTTCTTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCCGGC
TTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGA
AGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCA
ATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGG
GCCTTACCAGAACCCTATGGATCACTTGGCTGATCCTGTAAANCACNATG
GTTTGACTAGCCNTCAGTTTCACTGAGAGAGAAAATTCTTGNTCATTGCT
TGGAATATATATTCCAAGCCTTGTCATCCCCACTCTGNTCTATTCTACTT
TCCCCATGTAAAATATCTATGTGAAAAGTGATGTAACTTGG
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