EY692468

Overview
NameEY692468
Unique NameEY692468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_BEII9 (50S ribosomal protein L2 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIE 461
            + ++Q T GK  S GRN++GR+T+  RGGG K+  R ID KR    +   VER+EYDPNR+S+IA +R+ +
Sbjct:   28 KPVKQLTEGKSSSGGRNNNGRVTVRFRGGGHKQTYRIIDFKRRKLDMPAKVERIEYDPNRTSFIALIRYAD 98          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_AGRT5 (50S ribosomal protein L2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            + ++ K K V+AL Q    KG   GRN+ GRIT+  +GGG KR  R +D KR    + G VER+EYDPNR+++IA V + +G Q
Sbjct:   21 RASLYKGKPVKALTQGLSSKG---GRNNQGRITVRFQGGGHKRTYRLVDFKRRKFDVEGTVERLEYDPNRTAFIALVTYTDGEQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHILW (50S ribosomal protein L2 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            + A+ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R ID KR    + G VER+EYDPNR+++IA V + +G
Sbjct:   21 RSALYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRTYRLIDFKRRKFDVEGTVERIEYDPNRTAFIALVNYADG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHIL3 (50S ribosomal protein L2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            + A+ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R ID KR    + G VER+EYDPNR+++IA V + +G
Sbjct:   21 RSALYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRTYRLIDFKRRKFDVEGTVERIEYDPNRTAFIALVNYADG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_GRABC (50S ribosomal protein L2 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  165 AIQSISGVGANL*GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            A++  + V A+L G  +  +  + K K V+ L   T GK  + GRN+ GRIT   RGGG K+  R +D KR  + +   VER+EYDPNR+++IA +++ +G
Sbjct:    2 ALKHFNPVTASLRGTVLVDRSELWKGKPVKTL---TEGKHSTGGRNNHGRITSRFRGGGHKQTYRYVDFKRRKADVPATVERLEYDPNRTAFIALIKYQDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  168 IQSISGVGANL*GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            I++++ V A+L G  +  K  + K K  ++L  + + +G   GRNS G IT+ HRG G KRL R +D KR    +   VER+EYDPNR+++IA + + +G
Sbjct:    3 IKNLNSVTASLRGTVLLDKSMLWKGKPEKSLVSYKISRG---GRNSRGVITVRHRGRGHKRLYRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_BRUSI (50S ribosomal protein L2 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 464
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKPLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_BRUC2 (50S ribosomal protein L2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 464
            + ++  T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   28 KPVKPLTEGLSKKGGRNNTGRITVRFQGGGHKRSYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYTDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_OLICO (50S ribosomal protein L2 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            + L++ T GK  + GR ++GRIT+  RGGG K+  R ID KRT   +   VER+EYDPNR+++IA +++ +G
Sbjct:   28 KPLKKLTEGKHSNGGRGNTGRITVRFRGGGHKQTYRLIDFKRTKVDVPATVERLEYDPNRTAFIALIKYADG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_GLUOX (50S ribosomal protein L2 OS=Gluconobacter oxydans GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            + ++Q T GK KS GRN+ GR T+  RGGG K+  R +D KR    +   VER+EYDPNR+++IA +++ +G
Sbjct:   28 KPVKQLTEGKNKSGGRNNHGRTTVRFRGGGHKQSYRYVDFKRRKFDVAATVERLEYDPNRTAFIALIKYEDG 99          
The following BLAST results are available for this feature:
BLAST of EY692468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL2_BEII93.457e-1147.8950S ribosomal protein L2 OS=Beijerinckia indica su... [more]
RL2_AGRT53.457e-1146.4350S ribosomal protein L2 OS=Agrobacterium tumefaci... [more]
RL2_RHILW4.515e-1150.0050S ribosomal protein L2 OS=Rhizobium leguminosaru... [more]
RL2_RHIL34.515e-1150.0050S ribosomal protein L2 OS=Rhizobium leguminosaru... [more]
RL2_GRABC4.515e-1139.6050S ribosomal protein L2 OS=Granulibacter bethesde... [more]
RL2_EHRCR4.515e-1140.0050S ribosomal protein L2 OS=Ehrlichia chaffeensis ... [more]
RL2_BRUSI4.515e-1147.2250S ribosomal protein L2 OS=Brucella suis (strain ... [more]
RL2_BRUC24.515e-1147.2250S ribosomal protein L2 OS=Brucella canis (strain... [more]
RL2_OLICO5.897e-1145.8350S ribosomal protein L2 OS=Oligotropha carboxidov... [more]
RL2_GLUOX5.897e-1145.8350S ribosomal protein L2 OS=Gluconobacter oxydans ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692468 ID=EY692468; Name=EY692468; organism=Citrus sinensis; type=EST; length=918bp
CTGCCCGAAGGCCGTGGTATTCGCAAGGGCGCGGCGGATGCCATCCGCAG
TCATATCGAAGCATTGGGTGGAAGTTTTCCAGCCGCCTTGCAGGCCAAGG
TCGACCCACGCGTCCGCAACCCTAGACACCCTTTTTTCACTCGGTCACCG
CCGAATCCGCGGCAGCCATTCAGAGTATCTCCGGAGTAGGGGCTAATTTG
TAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAAAGAGGT
GAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTGGTAGGA
ACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCGAAGCGA
TTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGGTATTGT
TGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTCCTGTAC
GATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACCATAGAA
GAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCACCGCCGC
CATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGGATCAAA
GAAAAGTAGCTTCCTTCTCACCTGGACTGATGGCNGGCTGATGTAATGCA
TGGNTAGCATTCCCTAGTCGAAGAGCCCCTTACGACTACTAGTGATAGCA
AGGGTGCAGGAGGAAAAGGTAAATAACTTGCGCAAGGATGGCTTCTTTTC
TGCATCTCATCTCCATGGGCAGGGAAAGACTGCCTCCTTTTCTACCCTAG
GATGCAGTAGCTGGACGGAAACCACTTTCTCGCCCCTCNATGGAAAAAAA
AGCGAAGGAGTGATACTCACCTGACAAGAGGAAAAACCATATCCCTGGTG
AGATCAAAGGGAAACCAA
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