EY688646

Overview
NameEY688646
Unique NameEY688646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.284e-48
Identity = 84/109 (77.06%), Postives = 96/109 (88.07%), Query Frame = 3
Query:    3 KLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYREPNKS-GPIPVHLIKNLVKSIGEDHFVSDTGEIVYYETDPQL 326
            KLPWYRGKEW+YLRGGLTT+DRDYG  NNIHHDIGTHVIHHLFPQIPHYHLVEAT+AAKPV GKYYREP KS  P+P HLI  +++S   DHFVSDTG++VYY+TD ++
Sbjct:  338 KLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFHLIGEIIRSFKTDHFVSDTGDVVYYQTDSKI 446          
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.631e-20
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 3
Query:    6 LPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYR 203
            LP Y   EW++LRG L TVDRDYGI N + H+I  THV HHLF  +PHYH +EATKA KP+LG+YYR
Sbjct:  279 LPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYR 345          
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.963e-19
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    6 LPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYR 203
            LP Y   EW++LRG L TVDRDYGI N + H+I  THV HHLF  +PHYH +E TKA KP+LG YY+
Sbjct:  280 LPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQ 346          
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.106e-18
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    6 LPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYR 203
            LP Y   EW++LRG L TVDRDYGI N + H+I  THV HHLF  +PHY+ +EATKA KP+LG YY+
Sbjct:  279 LPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345          
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.886e-18
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    6 LPWYRGKEWNYLRGGLTTVDRDYGIFNNI-HHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYR 203
            LP Y   EW++L+G L T+DRDYGI N + HH   THV HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct:  283 LPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQ 349          
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.765e-16
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    6 LPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYR 203
            LP Y   EWN+LRG L+T+DRD+G  N++ HD+  THV+HHLF  IPHYH  EA  A   VLG +Y+
Sbjct:  272 LPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYK 338          
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 3
Query:    3 KLPWYRGKEWNYLRGGLTTVDRDYGIF--NNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYREPNKSGPIPVHLIKNLVKSIGEDHFVSDTGEIVYYE 311
            KLP YR   WN+ RG L TVDR +G F  +  H  + THV HHLF Q+P YH  EAT   K +LG+YY         P  ++  + +S  E  FV D G++V+++
Sbjct:  301 KLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
BLAST of EY688646 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 3
Query:    3 KLPWYRGKEWNYLRGGLTTVDRDYGIF--NNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYREPNKSGPIPVHLIKNLVKSIGEDHFVSDTGEIVYYE 311
            KLP YR   WN+ RG L TVDR +G F  +  H  + THV HHLF Q+P YH  EAT   K +LG+YY         P  ++  + +S  E  FV D G++V+++
Sbjct:  301 KLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
The following BLAST results are available for this feature:
BLAST of EY688646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3C_SOYBN2.284e-4877.06Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FD6E2_SOYBN2.631e-2064.18Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU4.963e-1961.19Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH1.106e-1861.19Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.886e-1858.21Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL1.765e-1655.22Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS1.951e-1541.90Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP1.951e-1541.90Delta(12) fatty acid desaturase OS=Mortierella alp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688646 ID=EY688646; Name=EY688646; organism=Citrus sinensis; type=EST; length=486bp
ACAAACTACCTTGGTACCGTGGCAAGGAATGGAATTATTTGAGAGGAGGG
CTAACAACAGTGGATAGAGATTATGGAATCTTCAACAACATTCACCATGA
TATCGGCACTCATGTCATTCATCATCTTTTCCCTCAAATCCCACATTATC
ACTTAGTAGAGGCCACAAAGGCAGCAAAGCCAGTGCTGGGAAAGTACTAC
CGTGAGCCGAATAAATCAGGGCCAATTCCAGTCCACTTGATCAAGAATTT
GGTGAAAAGCATTGGCGAAGACCACTTTGTGAGTGACACTGGAGAAATTG
TGTACTATGAGACGGACCCTCAGCTGAAGAAATTTTTAGCAACCAAGTTT
GAAAGATACTTTTAGAGCTTACGTTATTAGTCTTCCTAAGCCAGGGCACA
TAGCCTATATAATGTACTTCCAATAACTCCCTTTGCTTTATGAAGTTTAA
TTCTGCCACTTAAAACTTAAAAAAAAAAAAAAAAAG
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