EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CLOD6 (50S ribosomal protein L13 OS=Clostridium difficile (strain 630) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.509e-25
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W + DA+G+ LGRLA+++ATV++GK KPT+ P+ D GD  +V+NA+ I ++G+KL  K Y +HTGY+G LKE + ++ M++ P E I  AV  MLP+N           +F G+EH
Sbjct:   14 KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BART1 (50S ribosomal protein L13 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.509e-25
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+  VLGRLA+ VA  ++GK K T+ P+ DDGD  IV+NA  I +TG+K  +K YYWHTGYIG +KERT ++ +E R P   + KAV RM+PR            ++ GS+HP
Sbjct:   14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKIALTGKKYTDKKYYWHTGYIGGIKERTARQLLEGRFPERVVEKAVERMIPRGPLGRRQLKNLRVYAGSQHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHILO (50S ribosomal protein L13 OS=Rhizobium loti GN=rplM PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.583e-25
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLA+ +A  ++GK KPT+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTG+ G +KERT ++ +E R P   + KAV RM+PR            ++ G+EHP
Sbjct:   14 KWILIDAEGLVVGRLATVIANHLRGKHKPTFTPHVDDGDNVIVINADKVVFTGKKFTDKVYYWHTGHPGGIKERTARQLLEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGAEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_AGRRK (50S ribosomal protein L13 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.583e-25
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  I +TG+K ++KVYYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWILIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKIVLTGKKYEDKVYYWHTGYAGGIKERTARQIIEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.985e-25
Identity = 51/118 (43.22%), Postives = 78/118 (66.10%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+G+ LGRLA++++ +++GK+KP Y P+ D GD  +V+NA  + VTGRK + KVY WHTGY G L+ER+ ++ + + P E +R+AV  M+P+            I+ G EHP
Sbjct:   14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKVYRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_EUBE2 (50S ribosomal protein L13 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplM PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.817e-25
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA    LGRLASQVA V++GK+KPTY P  D GD  IV+NA  + VTG+KL  KVYY H+ Y+G LKE TLKE ME+ P + I  AV  MLP+            ++ G +H
Sbjct:   14 KWYVVDAADYTLGRLASQVAAVLRGKNKPTYTPFLDCGDNVIVINADKVKVTGKKLDQKVYYSHSDYVGGLKETTLKEMMEKKPEKVIELAVKGMLPKGPLGRQMFTKLHVYAGPDH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHIE6 (50S ribosomal protein L13 OS=Rhizobium etli (strain CIAT 652) GN=rplM PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.021e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGYAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.021e-24
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD  IV+NA+ I +TGRK + K+YY H+GY G LKE   K  + + P   +R AV RMLP+N           I+ G  HP
Sbjct:   15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIYYRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SINMW (50S ribosomal protein L13 OS=Sinorhizobium medicae (strain WSM419) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDAS 644
            +W + DA+G V+GRLAS +A  ++GK K TY P+ DDGD  IV+NA+   +TG+K  +K YYWHTGY G +KERT ++ +E R P   I KAV RM+PR            ++ GS HP     P T+ D +
Sbjct:   14 KWILIDAEGLVVGRLASLIANRLRGKHKATYTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGSNHPHEAQQP-TVLDVA 144          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHIL3 (50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA+ +  TG+K  +KVYYWHTGY G +KER+ ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINAEKVVFTGKKYSDKVYYWHTGYAGGIKERSARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_CLOD63.509e-2544.4450S ribosomal protein L13 OS=Clostridium difficile... [more]
RL13_BART13.509e-2547.0650S ribosomal protein L13 OS=Bartonella tribocorum... [more]
RL13_RHILO4.583e-2545.3850S ribosomal protein L13 OS=Rhizobium loti GN=rpl... [more]
RL13_AGRRK4.583e-2547.0650S ribosomal protein L13 OS=Agrobacterium radioba... [more]
RL13_RUBXD5.985e-2543.2250S ribosomal protein L13 OS=Rubrobacter xylanophi... [more]
RL13_EUBE27.817e-2549.5750S ribosomal protein L13 OS=Eubacterium eligens (... [more]
RL13_RHIE61.021e-2446.2250S ribosomal protein L13 OS=Rhizobium etli (strai... [more]
RL13_CHLAD1.021e-2447.0150S ribosomal protein L13 OS=Chloroflexus aggregan... [more]
RL13_SINMW1.741e-2444.7050S ribosomal protein L13 OS=Sinorhizobium medicae... [more]
RL13_RHIL31.741e-2445.3850S ribosomal protein L13 OS=Rhizobium leguminosar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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