EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCS5 (50S ribosomal protein L13 OS=Mycoplasma synoviae (strain 53) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA+ QVLGRLAS VA+V++GK KPT+ PN D GD  I++NA+ + +TG+K KNKVYY H+GY G LK RT ++  E  PT  + KA+  M+P             ++ G EH
Sbjct:   15 KWFVVDAENQVLGRLASLVASVLRGKTKPTFTPNADMGDNVIIINAEKVKLTGKKEKNKVYYSHSGYPGGLKARTAEKLREEKPTALLEKAISGMIPHTKLGNQQRKNLYVYAGPEH 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BARHE (50S ribosomal protein L13 OS=Bartonella henselae GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+  VLGRLA+ VA  ++GK K T+ P+ DDGD  IV+NA  I +TG+K  +K YYWHTGYIG +K+RT ++ +E R P   + KAV RM+PR            ++ GS+HP
Sbjct:   14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKISLTGKKYTDKKYYWHTGYIGGIKKRTARQILEGRFPERVVEKAVERMIPRGPLGRRQLKNLRVYAGSQHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOPT (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KER+ K  +E R P   + KA+ RM+PR            ++PG+EHP
Sbjct:   14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINASKVVLTGRKRDNKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIPRGPLGRVQMGNLRVYPGAEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOPA (50S ribosomal protein L13 OS=Rhodopseudomonas palustris GN=rplM PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KER+ K  +E R P   + KA+ RM+PR            ++PG+EHP
Sbjct:   14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINASKVVLTGRKRDNKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIPRGPLGRVQMGNLRVYPGAEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHIME (50S ribosomal protein L13 OS=Rhizobium meliloti GN=rplM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLAS +A  ++GK K TY P+ DDGD  IV+NA+   +TG+K  +K YYWHTGY G +KERT ++ +E R P   I KAV RM+PR            ++ GS HP
Sbjct:   14 KWILIDAEGLVVGRLASLIANRLRGKHKATYTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_AGRT5 (50S ribosomal protein L13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplM PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDASS 647
            +W + DA+G V+GRLA+ VAT ++GK K T+ P+ DDGD  IV+NA+ +  TG+K  +K YYWHTG+ G +KERT ++ +E R P   + KA+ RM+PR            ++ GS HP     P T+ D ++
Sbjct:   14 KWIIIDAEGLVVGRLATIVATRLRGKHKATFTPHVDDGDNVIVINAEKVAFTGKKYSDKKYYWHTGHPGGIKERTARQIIEGRFPERVVEKAIERMIPRGPLGRRQMKNLRVYAGSNHPHEAQQP-TVLDVAA 145          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHILW (50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTG+ G +KERT ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGFAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_GEMAT (50S ribosomal protein L13 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 56/125 (44.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN-XXXXXXXXXXXIFPGSEHPFWRPAP 623
            RW V DA+G VLGRLAS+VA +++GK KP Y P+ D GD  IV+NA  + VTGRK + K Y+ HTGY+GH K       + + P   I KAV  MLP+             +F G+EHP    +P
Sbjct:   14 RWYVVDAEGMVLGRLASEVAKIIRGKHKPMYTPHMDTGDFVIVINASKVQVTGRKAEQKTYFSHTGYMGHEKHTPFASVLAKHPERVIEKAVYGMLPKTALGRQVLRRKLRVFAGAEHPHIAQSP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CHLSY (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD  IV+NA+ I +TGRK   K+YY HTGY G +K    K  + + P   +R AV RMLP+N           I+ G  HP
Sbjct:   15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIYYRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CHLAA (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD  IV+NA+ I +TGRK   K+YY HTGY G +K    K  + + P   +R AV RMLP+N           I+ G  HP
Sbjct:   15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIYYRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHP 131          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_MYCS51.741e-2447.0150S ribosomal protein L13 OS=Mycoplasma synoviae (... [more]
RL13_BARHE1.741e-2446.2250S ribosomal protein L13 OS=Bartonella henselae G... [more]
RL13_RHOPT2.274e-2446.2250S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_RHOPA2.274e-2446.2250S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_RHIME2.274e-2447.0650S ribosomal protein L13 OS=Rhizobium meliloti GN... [more]
RL13_AGRT52.274e-2442.1150S ribosomal protein L13 OS=Agrobacterium tumefac... [more]
RL13_RHILW2.970e-2445.3850S ribosomal protein L13 OS=Rhizobium leguminosar... [more]
RL13_GEMAT2.970e-2444.8050S ribosomal protein L13 OS=Gemmatimonas aurantia... [more]
RL13_CHLSY2.970e-2446.1550S ribosomal protein L13 OS=Chloroflexus aurantia... [more]
RL13_CHLAA2.970e-2446.1550S ribosomal protein L13 OS=Chloroflexus aurantia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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