EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THEPX (50S ribosomal protein L13 OS=Thermoanaerobacter sp. (strain X514) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD  IVLNA+ I +TG KL++K Y ++TGY G LKE   K+ M+  P   I  AV  MLP+N           ++ GSEH
Sbjct:   14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKYYKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THEP3 (50S ribosomal protein L13 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD  IVLNA+ I +TG KL++K Y ++TGY G LKE   K+ M+  P   I  AV  MLP+N           ++ GSEH
Sbjct:   14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKYYKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SYNAS (50S ribosomal protein L13 OS=Syntrophus aciditrophicus (strain SB) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 50/116 (43.10%), Postives = 78/116 (67.24%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W + DA+GQVLGR+AS++A  ++GK KP Y P+ D GD  +V+NA+ + +TG+KL++K+YY H+GY G LKE+T  + M+  PT+ +  AV  MLP+N           ++ G++H
Sbjct:   15 WYLIDAEGQVLGRMASEIARRLRGKHKPEYTPHVDTGDFIVVVNAEKMVLTGKKLRDKIYYHHSGYPGGLKEKTAGKMMQEKPTDVLWLAVKGMLPKNSLGRRMLRKLKVYAGNDH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHIEC (50S ribosomal protein L13 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ G  HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGYAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGPNHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PERMH (50S ribosomal protein L13 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDASSTW 653
            W V DA G+ LGRLA+ +A +++GK KP + P+ D GD  IVLNA  I VTG+KL +K Y WHT   G L  RTL+  +E  P E IR AV RMLP+N           ++ GSEH      P  + +  + W
Sbjct:   15 WYVIDATGKNLGRLATLIANILRGKHKPYFQPDVDVGDFVIVLNADKITVTGKKLTDKEYKWHTNRPGGLNVRTLQWMLEHKPEEVIRLAVERMLPKNKLQKRFMKRLKVYTGSEHKHQAQNPKNLEELKALW 147          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCA9 (50S ribosomal protein L13 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA Q A +++GK KPT+AP+ D GD  I++NA+ I ++G KL NK  Y H+G+ G L +R++ EQ+E+ PT  + KA++ MLP+N           ++ G+EHP
Sbjct:   15 WYVIDATDVVLGRLAVQAANLLRGKHKPTFAPHVDGGDFVIIINAEKIALSGNKLTNKFAYRHSGFPGGLSKRSIGEQLEKFPTRTVEKAIVGMLPKNKLGRQIERKLKVYAGAEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CYAP7 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 58/134 (43.28%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  237 NLEGL--RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            NLE L  +W V DA GQ LGRLAS++A +++GK+KPTY P+ D GD  IV+NA+ + VTG+K + KVY+ H+G  G +K  T ++   R P   + KAV  MLP+N           ++ GS HP     P T+
Sbjct:    8 NLETLDKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQKVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSLGRQLFTKLKVYSGSNHPHQAQKPETL 141          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BARQU (50S ribosomal protein L13 OS=Bartonella quintana GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+  VLGRLA+ VA  ++GK K T+ P+ DDGD  IV+NA  I +TG+K  +K YYWHTGYIG +KERT ++ +E R P   + KAV RM+PR            ++ GS++P
Sbjct:   14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKIVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQLRNLHVYAGSQNP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THISH (50S ribosomal protein L13 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.067e-24
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W + DA G+ LGRLAS+VA  ++GK KP Y P+ D GD  +++NA  + V+G+K ++K+YY HTGYIGH+K     + MER P  AI  AV  MLP+N           ++ G+EH
Sbjct:   15 WYLVDASGKTLGRLASEVARRLRGKHKPEYTPHVDTGDYIVIINADKVRVSGKKAQDKMYYHHTGYIGHMKSMNFNQLMERAPERAIEFAVKGMLPKNPLGRAMFKKLKVYAGTEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOPS (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KERT K  +E R P   + KAV RM+PR            ++ G+EHP
Sbjct:   14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNIIIINAAKVVLTGRKRDNKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYGGAEHP 132          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_THEPX3.879e-2448.7250S ribosomal protein L13 OS=Thermoanaerobacter sp... [more]
RL13_THEP33.879e-2448.7250S ribosomal protein L13 OS=Thermoanaerobacter ps... [more]
RL13_SYNAS3.879e-2443.1050S ribosomal protein L13 OS=Syntrophus aciditroph... [more]
RL13_RHIEC3.879e-2445.3850S ribosomal protein L13 OS=Rhizobium etli (strai... [more]
RL13_PERMH3.879e-2443.6150S ribosomal protein L13 OS=Persephonella marina ... [more]
RL13_MYCA93.879e-2444.4450S ribosomal protein L13 OS=Mycobacterium abscess... [more]
RL13_CYAP73.879e-2443.2850S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_BARQU3.879e-2446.2250S ribosomal protein L13 OS=Bartonella quintana G... [more]
RL13_THISH5.067e-2444.8350S ribosomal protein L13 OS=Thioalkalivibrio sp. ... [more]
RL13_RHOPS6.617e-2447.0650S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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