EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MANSM (50S ribosomal protein L13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplM PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A+ ++GK K  Y P+ D GD  IV+NA  + VTGRK  +KVYYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ GS+H
Sbjct:   15 WYVVDATGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSQH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_TRIEI (50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain IMS101) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  237 NLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            ++EG +W V DA+GQ LGRLA+ +A +++GK+KPTY P+ D GD  IV+NA+ + VTG+K   K+Y  H+G  G +K     +   R P   I +AV  MLP+N           ++PGS HP
Sbjct:   10 DIEGKKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQKLYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRKLHNKLKVYPGSNHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_OLICO (50S ribosomal protein L13 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 58/132 (43.94%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDAS 644
            +W + DAKG V+GRLA+ VA  ++GK  PTY P+ D GD  IV+NA  + +TGRK  NK+YY HTG+IG +KER+ K  +E R P   + KA+ RM+PR            ++ G+EHP     P  +  AS
Sbjct:   14 KWVIIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIVINAAQVVLTGRKRDNKMYYNHTGFIGGIKERSAKSILEGRFPERVLEKAIERMIPRGPLGRIQMGNLRVYAGAEHPHEAQNPEVVDIAS 145          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCTU (50S ribosomal protein L13 OS=Mycobacterium tuberculosis GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N           ++ G EHP
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCTA (50S ribosomal protein L13 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N           ++ G EHP
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCBT (50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N           ++ G EHP
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCBP (50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N           ++ G EHP
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCBO (50S ribosomal protein L13 OS=Mycobacterium bovis GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N           ++ G EHP
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MICLC (50S ribosomal protein L13 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*T 629
            +W + DA   VLGRLAS  AT+++GK KPT+AP+ D GD  I++NA+ + +TG KL+ K  Y H+GY G LK ++  E +E +P  A+ KAV  MLP+N           ++ G+EHP     P T
Sbjct:   14 QWHIIDATDVVLGRLASHTATLLRGKHKPTFAPHMDMGDYVIIVNAEKVALTGAKLEKKRAYRHSGYPGGLKSQSYAELLETNPVRAVEKAVKGMLPKNSLAAQQLSKLKVYKGAEHPHTAQQPQT 139          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BACHK (50S ribosomal protein L13 OS=Bacillus thuringiensis subsp. konkukian GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP     P
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKP 138          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_MANSM6.617e-2445.6950S ribosomal protein L13 OS=Mannheimia succinicip... [more]
RL13_TRIEI8.643e-2442.2850S ribosomal protein L13 OS=Trichodesmium erythra... [more]
RL13_OLICO8.643e-2443.9450S ribosomal protein L13 OS=Oligotropha carboxido... [more]
RL13_MYCTU8.643e-2445.3050S ribosomal protein L13 OS=Mycobacterium tubercu... [more]
RL13_MYCTA8.643e-2445.3050S ribosomal protein L13 OS=Mycobacterium tubercu... [more]
RL13_MYCBT8.643e-2445.3050S ribosomal protein L13 OS=Mycobacterium bovis (... [more]
RL13_MYCBP8.643e-2445.3050S ribosomal protein L13 OS=Mycobacterium bovis (... [more]
RL13_MYCBO8.643e-2445.3050S ribosomal protein L13 OS=Mycobacterium bovis G... [more]
RL13_MICLC8.643e-2442.8650S ribosomal protein L13 OS=Micrococcus luteus (s... [more]
RL13_BACHK8.643e-2441.9450S ribosomal protein L13 OS=Bacillus thuringiensi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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