EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCH2 (50S ribosomal protein L13 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+ ++LGRLA+ VA+ ++GK  P + PN D GD  I++NA+ I +T +K   K+YY H+GY G L+ RT +E   + P   + +A+  M+P             ++ GSEHP
Sbjct:   15 KWFVIDAESKILGRLAAFVASRLRGKHYPHFTPNVDMGDKIIIINAEKILLTAKKEDQKLYYNHSGYPGGLRVRTAREMRAKKPIALLERAIYGMIPHTKLGDKQRKNLYVYSGSEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MICAN (50S ribosomal protein L13 OS=Microcystis aeruginosa (strain NIES-843) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  237 NLEGL--RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            NLE L  +W V DA  Q LGRLA+++A +++GK+K T+ P+ D GD  IV+NA+ + VTG+K + KVY   +G  G +K  +  +  +R P   I  AV  MLP+N           ++ G+EHP     P
Sbjct:    8 NLETLEQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQKVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGAEHPHQAQQP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CLOAB (50S ribosomal protein L13 OS=Clostridium acetobutylicum GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V D  G+ LGR ASQ+A++++GK+KP Y PN D GD  IVLNA+ + +TG+K   K++  HT Y G LKE + K+ + +       +AV RMLP             ++ G EH
Sbjct:   14 KWYVIDVAGKPLGRAASQIASILRGKNKPIYTPNVDTGDYVIVLNAEKVLLTGKKADQKMFRHHTLYPGGLKEMSYKDAIAKKADFVFYEAVRRMLPSGVLGRKMIKKLKVYKGEEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CHRSD (50S ribosomal protein L13 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  + LGRLA+++A  ++GK KP Y P+ D GD  +V+NA+ + VTG K + K YY HTGY G L+  + ++ ++  P   I  AV  MLP+            ++ G+EHP
Sbjct:   15 WYVVDATDKTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVVNAEKVRVTGNKAQAKNYYRHTGYPGGLRSMSFEKLIDHAPERVIESAVKGMLPKGPLGRAMYSKLKVYAGAEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BURTA (50S ribosomal protein L13 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rplM PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+            ++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BURPS (50S ribosomal protein L13 OS=Burkholderia pseudomallei GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+            ++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BURP6 (50S ribosomal protein L13 OS=Burkholderia pseudomallei (strain 668) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+            ++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BURP1 (50S ribosomal protein L13 OS=Burkholderia pseudomallei (strain 1710b) GN=rplM PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+            ++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BURP0 (50S ribosomal protein L13 OS=Burkholderia pseudomallei (strain 1106a) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+            ++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SYNPX (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF--WRPAP*TIRDASS 647
            +W + DA+ + LGRLA++VA V++GK+ P++ P+ D GD  +V+NA+ I V+G K   K+Y  H+G  G +K  T +   +R P   + KA+  MLP N           ++ GSEHP    +P P  +  ++S
Sbjct:   15 QWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQKLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLPHNALGRQMFRKLKVYKGSEHPHAAQKPQPLQLNPSAS 148          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_MYCH23.758e-1938.1450S ribosomal protein L13 OS=Mycoplasma hyopneumon... [more]
RL13_MICAN3.758e-1938.9350S ribosomal protein L13 OS=Microcystis aeruginos... [more]
RL13_CLOAB3.758e-1940.1750S ribosomal protein L13 OS=Clostridium acetobuty... [more]
RL13_CHRSD3.758e-1939.3250S ribosomal protein L13 OS=Chromohalobacter sale... [more]
RL13_BURTA3.758e-1941.8850S ribosomal protein L13 OS=Burkholderia thailand... [more]
RL13_BURPS3.758e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_BURP63.758e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_BURP13.758e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_BURP03.758e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_SYNPX4.908e-1935.8250S ribosomal protein L13 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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