EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BACAA (50S ribosomal protein L13 OS=Bacillus anthracis (strain A0248) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.643e-24
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP     P
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PELPD (50S ribosomal protein L13 OS=Pelobacter propionicus (strain DSM 2379) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.129e-23
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  204 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            MK  +A +  +  +   W + DA+  VLGRLASQ+A +++GK+K  Y P+ D GD  IV+NA+ I +TGRKL +K YY H+G+ G LKE +  + +E+ P E I++AV  MLP+N           I+ GS HP
Sbjct:    1 MKTEVAKIENVKRD---WYLVDAQEMVLGRLASQIANILRGKNKAIYTPSVDTGDFVIVVNAEKIALTGRKLADKSYYSHSGFPGGLKEISAGKLLEKKPEELIKRAVKGMLPKNKLSRHMLKKLKIYAGSSHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCLE (50S ribosomal protein L13 OS=Mycobacterium leprae GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.129e-23
Identity = 53/132 (40.15%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF--WRPAP*TIRDAS 644
            W V DA   VLGRLA+  AT+++GK KPT+APN D GD  IV+NA  + ++G K+++K+ Y H+GY G L++RT+ E M++ P   + KA++ MLP+N           ++ G +HP    +P P  I+  +
Sbjct:   15 WYVIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMVYRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKNKLSRQIQRKLRVYAGPDHPHSAQQPVPFEIKQVA 146          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCLB (50S ribosomal protein L13 OS=Mycobacterium leprae (strain Br4923) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.129e-23
Identity = 53/132 (40.15%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF--WRPAP*TIRDAS 644
            W V DA   VLGRLA+  AT+++GK KPT+APN D GD  IV+NA  + ++G K+++K+ Y H+GY G L++RT+ E M++ P   + KA++ MLP+N           ++ G +HP    +P P  I+  +
Sbjct:   15 WYVIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMVYRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKNKLSRQIQRKLRVYAGPDHPHSAQQPVPFEIKQVA 146          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DESAD (50S ribosomal protein L13 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.129e-23
Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA+  VLGRLA+Q+A  ++GKDK  + P+ D GD  +VLNA  I VTG K+  K YY HT + G LKERTLK  +E+ P   I  AV  MLP+N           ++ G+EHP     P
Sbjct:   15 WFVVDAENMVLGRLATQIANKLRGKDKAMFTPHVDTGDFVVVLNADKIKVTGNKMDQKTYYKHTNHPGGLKERTLKVMLEKKPEVVIETAVRGMLPKNRLGKQMIKKLKVYAGTEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BRAJA (50S ribosomal protein L13 OS=Bradyrhizobium japonicum GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.129e-23
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DAKG V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA+   +TGRK + K YY HTGY+GH+KERT ++ +E + P   + KAV RM+PR            ++ G++HP
Sbjct:   14 KWVLIDAKGLVVGRLATIVAMRLRGKHLPTYTPHVDCGDNVIIINAQHAVLTGRKREQKTYYKHTGYVGHVKERTARQILEGKHPERVLEKAVERMIPRGPLGRVQMGNLRVYGGADHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOPB (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplM PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK +NKVYY HTG+IG +KERT K  +E R P   + KA+ RM+PR            ++ G +HP
Sbjct:   14 KWIVIDATGLVVGRLATLVANRLRGKHLPTYTPHVDCGDHVIIVNAAKVVLTGRKRENKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAIERMIPRGPLGRMQMGNLRVYGGPDHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCS2 (50S ribosomal protein L13 OS=Mycobacterium smegmatis GN=rplM PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLAS  AT+++GK KPT+ PN D GD  IV+NA  I V+G KL  K  Y H+GY G L++RT+ E +E+ PT  +  A++ MLP N           ++ G +HP
Sbjct:   15 WYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCMM (50S ribosomal protein L13 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++  KL+NK+ Y H+GY G L++R++ E ME+ P   + KA++ MLP+N           ++ G EHP     P
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISNEKLRNKMAYSHSGYPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKNKLSRQIQSKLRVYAGPEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DESVV (50S ribosomal protein L13 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA+ ++LGRLA+Q+A  ++GK KP +AP+ D+GD  +V+N + I VTG+KL  K YY H+GY+G L+E +L++ +   P E + KAV  MLPRN           ++ G+EHP
Sbjct:   15 WFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRLGRAMLTKLKVYRGTEHP 131          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_BACAA8.643e-2441.9450S ribosomal protein L13 OS=Bacillus anthracis (s... [more]
RL13_PELPD1.129e-2342.5450S ribosomal protein L13 OS=Pelobacter propionicu... [more]
RL13_MYCLE1.129e-2340.1550S ribosomal protein L13 OS=Mycobacterium leprae ... [more]
RL13_MYCLB1.129e-2340.1550S ribosomal protein L13 OS=Mycobacterium leprae ... [more]
RL13_DESAD1.129e-2345.5350S ribosomal protein L13 OS=Desulfovibrio salexig... [more]
RL13_BRAJA1.129e-2344.5450S ribosomal protein L13 OS=Bradyrhizobium japoni... [more]
RL13_RHOPB1.474e-2346.2250S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_MYCS21.474e-2345.3050S ribosomal protein L13 OS=Mycobacterium smegmat... [more]
RL13_MYCMM1.474e-2342.2850S ribosomal protein L13 OS=Mycobacterium marinum... [more]
RL13_DESVV1.474e-2344.4450S ribosomal protein L13 OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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