EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAEIE (50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittEE) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA  + VTGRK  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGAEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAEI8 (50S ribosomal protein L13 OS=Haemophilus influenzae (strain 86-028NP) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA  + VTGRK  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGAEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DESMR (50S ribosomal protein L13 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 56/126 (44.44%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            W V DA  ++LGRLAS VA  ++GK K  +AP+ D GD  IV+NA  +  TGRKL  K YY H+G+IG LKE +L++ + + P + IRKAV  MLP+N           I+ G  HP     P T+
Sbjct:   15 WFVVDASDKILGRLASAVAVRLRGKHKVEFAPHMDTGDCIIVVNAAKVLTTGRKLDQKKYYRHSGWIGGLKETSLRDMLAKKPEDVIRKAVRGMLPKNRLGRAMLKKLKIYAGEAHPHEAQKPETL 140          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ACTSZ (50S ribosomal protein L13 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA  + VTGRK  +KVYYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G++H
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGAQH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HERA2 (50S ribosomal protein L13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA+ QVLGRLA+Q+AT+++GK KPTY P+ D GD  IV+NA+ I VTG K   K+YY H+ + G LK    K  M+  P   I  AV  MLPRN           ++ G  HP    +P
Sbjct:   15 WLVVDAQNQVLGRLATQIATLIRGKHKPTYTPSMDGGDFVIVVNAEKIRVTGDKANQKIYYRHSNFPGGLKRTAYKVMMQTHPERIIYFAVKGMLPRNRLSRHIIKKLKVYAGESHPHASQSP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELHP (50S ribosomal protein L13 OS=Helicobacter hepaticus GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DAK +V GRL +++AT+++GK KP + P+ D GD  +++NA ++  TG KLK+K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+N           ++ GSEHP
Sbjct:   15 QWIVLDAKDKVFGRLITEIATLLRGKHKPCFTPHIDCGDFVVIINATEVKFTGMKLKDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKNKLGRAMLKKLKVYRGSEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAES2 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 2336) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  +V+NA+ + VTG K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ GSEH
Sbjct:   15 WYVVDATGKTLGRLAAELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAES1 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 129Pt) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  +V+NA+ + VTG K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ GSEH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAEIN (50S ribosomal protein L13 OS=Haemophilus influenzae GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA  + VTGRK  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGGEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAEIG (50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittGG) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA  + VTGRK  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGGEH 130          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_HAEIE2.515e-2344.8350S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_HAEI82.515e-2344.8350S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_DESMR2.515e-2344.4450S ribosomal protein L13 OS=Desulfovibrio magneti... [more]
RL13_ACTSZ2.515e-2344.8350S ribosomal protein L13 OS=Actinobacillus succin... [more]
RL13_HERA23.284e-2344.7250S ribosomal protein L13 OS=Herpetosiphon auranti... [more]
RL13_HELHP3.284e-2341.5350S ribosomal protein L13 OS=Helicobacter hepaticu... [more]
RL13_HAES23.284e-2343.9750S ribosomal protein L13 OS=Haemophilus somnus (s... [more]
RL13_HAES13.284e-2343.9750S ribosomal protein L13 OS=Haemophilus somnus (s... [more]
RL13_HAEIN3.284e-2344.8350S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_HAEIG3.284e-2344.8350S ribosomal protein L13 OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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