EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_EUBR3 (50S ribosomal protein L13 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 54/127 (42.52%), Postives = 76/127 (59.84%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            +W V DA+G+ LGRLAS+VA V++GK+K  + P+ D GD  IV+NA  + VTG+KL  K+YY H+ YIG +KE TL+E M + P   I  AV  MLP+            ++ G +H      P T+
Sbjct:   14 KWYVVDAEGKTLGRLASEVAKVLRGKNKAIFTPHIDTGDYVIVVNADKVKVTGKKLDQKIYYHHSDYIGGMKETTLREMMNKHPERVIEYAVKGMLPKGPLGRQMYTKLFVYAGPDHKHAAQKPETL 140          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BORA1 (50S ribosomal protein L13 OS=Bordetella avium (strain 197N) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DAKG+VLGR+AS+VA  ++GK KP + P+ D GD  +++NA DI VTG+K ++K Y+ HT Y G ++E   ++  ER P  AI+KAV  MLP+            ++ G+EHP     P
Sbjct:   15 WFVIDAKGKVLGRVASEVARRLRGKHKPEFTPHVDTGDYIVIINAADIVVTGKKSQDKKYFRHTTYPGGIRETNFEKMQERFPGRAIQKAVKGMLPKGPLGYAMIKKLKVYAGAEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BACHD (50S ribosomal protein L13 OS=Bacillus halodurans GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA+GQ LGRLAS+VA++++GK KPTY P+ D GD  I++NA+ I +TG KL++K+YY H+G+ G LKE    +     P + +  A+  MLP+N           ++ GSEH
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKHKPTYTPHVDTGDHVIIINAEKIHLTGNKLQDKIYYRHSGHPGGLKETRAADMRANKPEKMLELAIKGMLPKNTLGRKQGMKLHVYAGSEH 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BACCN (50S ribosomal protein L13 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA+GQ LGRLAS+VA++++GK KPT+ P+ D GD  I++NA+ + +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP     P
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKHKPTFTPHVDTGDHVIIINAEKVHLTGNKLNDKIYYRHTQHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQMSKKLNVYAGAEHPHQAQKP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ACIF5 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGRL+ ++A  ++GK KP Y P+ D GD  +V+NA  I VTG K K+K+YY HTGY+G+LK  + ++  E  P   I  AV  MLP+N           ++ GSEHP
Sbjct:   15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ACIF2 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.284e-23
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGRL+ ++A  ++GK KP Y P+ D GD  +V+NA  I VTG K K+K+YY HTGY+G+LK  + ++  E  P   I  AV  MLP+N           ++ GSEHP
Sbjct:   15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THEFY (50S ribosomal protein L13 OS=Thermobifida fusca (strain YX) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.289e-23
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA   VLGRLAS+VAT+++GK KP YAP+ D GD  IV+NA  + +TG+KL+ K  Y H+GY G L+     E M ++P  A+ KAV  MLP+N           ++ G EHP     P
Sbjct:   14 QWHVIDASDVVLGRLASRVATLLRGKHKPYYAPHVDTGDYVIVVNADKVVLTGKKLEQKRAYRHSGYPGGLRSIPYSELMAKNPARAVEKAVKGMLPKNSLGRRMAKKLKVYAGPEHPHQAQKP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STRMK (50S ribosomal protein L13 OS=Stenotrophomonas maltophilia (strain K279a) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.289e-23
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + DA+G+ LGRLA+++A  ++GK KP Y P+ D GD  +V+NA+ I VTG+KL++K+Y+  TGYIG+LK  +L + +ER P   I  AV  MLP+            ++ G+EHP
Sbjct:   15 WYLVDAEGKTLGRLATELARRLRGKHKPVYTPHVDTGDYLVVINAEKIAVTGKKLQDKMYHRFTGYIGNLKTESLAQALERHPERVIEIAVKGMLPKGPLGRQMYRKLKVYAGTEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_METS4 (50S ribosomal protein L13 OS=Methylobacterium sp. (strain 4-46) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.289e-23
Identity = 59/128 (46.09%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            +W + DA+G V+GRLAS VA  ++GK KP Y P+ D GD  IV+NA  +  TGRK   KVYY HTG+ G +KER+ K  +E R P   + KAV RMLPR            ++ GSEHP     P T+
Sbjct:   14 KWVIIDAEGLVVGRLASIVAMRLRGKHKPQYTPHVDCGDNVIVINADKVKFTGRKYDQKVYYHHTGFPGGIKERSAKYILEGRFPERVVEKAVERMLPRGPLFRRILGNLRVYKGSEHPHAAQQPETL 141          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_FRAP2 (50S ribosomal protein L13 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.289e-23
Identity = 50/124 (40.32%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W + DA  + LGRLAS+VA +++GK+KP Y P+ D GD  +++NA+ + VTG K K K+Y+ HTGYIG +K  + ++ +   P  AI KAV  MLPR+           ++ G  HP     P
Sbjct:   14 QWLLIDATDKTLGRLASEVAMILRGKNKPEYTPSMDTGDYVVIINAEKVAVTGNKRKGKIYHHHTGYIGGIKSISFEKLIATHPERAIEKAVKGMLPRSPLGRAMYKKLKVYAGENHPHTAQQP 137          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_EUBR33.284e-2342.5250S ribosomal protein L13 OS=Eubacterium rectale (... [more]
RL13_BORA13.284e-2343.0950S ribosomal protein L13 OS=Bordetella avium (str... [more]
RL13_BACHD3.284e-2343.5950S ribosomal protein L13 OS=Bacillus halodurans G... [more]
RL13_BACCN3.284e-2341.1350S ribosomal protein L13 OS=Bacillus cereus subsp... [more]
RL13_ACIF53.284e-2344.4450S ribosomal protein L13 OS=Acidithiobacillus fer... [more]
RL13_ACIF23.284e-2344.4450S ribosomal protein L13 OS=Acidithiobacillus fer... [more]
RL13_THEFY4.289e-2344.3550S ribosomal protein L13 OS=Thermobifida fusca (s... [more]
RL13_STRMK4.289e-2343.5950S ribosomal protein L13 OS=Stenotrophomonas malt... [more]
RL13_METS44.289e-2346.0950S ribosomal protein L13 OS=Methylobacterium sp. ... [more]
RL13_FRAP24.289e-2340.3250S ribosomal protein L13 OS=Francisella philomira... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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