EY661026

Overview
NameEY661026
Unique NameEY661026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.597e-64
Identity = 139/257 (54.09%), Postives = 165/257 (64.20%), Query Frame = 2
Query:  101 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL----------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            L +  F G++   + A  +V  +G+ + TM   +          WYG DRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE    LY    F                 +E+KNGRLAMFSM  FF  AIVTGKGP E       +      W +AT
Sbjct:    8 LSSPAFAGKAVKLSPAASEV--LGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFAT 261          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.597e-64
Identity = 141/245 (57.55%), Postives = 157/245 (64.08%), Query Frame = 2
Query:  107 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            A+   G  R T    K V P G +        WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE    LY    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W +AT
Sbjct:   24 ASEVFGTGRVTMR--KTVKPTGPS-----GSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 6.004e-64
Identity = 135/221 (61.09%), Postives = 147/221 (66.52%), Query Frame = 2
Query:  176 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGTTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTA LSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P       LY    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT 261          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 6.004e-64
Identity = 139/257 (54.09%), Postives = 163/257 (63.42%), Query Frame = 2
Query:  101 LRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGTTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            L ++ F G++   + +  ++   GN K TM            +  WYGP+RVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFK G+QIFS+GGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P       LY    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:    8 LSSSSFAGKAVKLSPSSSEIT--GNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 6.004e-64
Identity = 140/245 (57.14%), Postives = 157/245 (64.08%), Query Frame = 2
Query:  107 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGT-TLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            +TP LG  R +            +K       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E  WFKAG+QIFSEGGLDYLGN +L+HAQSILA+   QV+LMG VEG+RI G P +GE T  +Y    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       E      W YAT
Sbjct:    4 STPQLGVGRVSMRKTA-------SKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYAT 239          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.841e-64
Identity = 132/213 (61.97%), Postives = 148/213 (69.48%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGT-TLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+   QV+LMG +EG+R+ G P +GE T  +Y    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:   62 WYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYAT 272          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.841e-64
Identity = 134/221 (60.63%), Postives = 147/221 (66.52%), Query Frame = 2
Query:  176 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGTTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+  +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P       LY    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W +AT
Sbjct:   41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.841e-64
Identity = 137/249 (55.02%), Postives = 154/249 (61.85%), Query Frame = 2
Query:  116 FLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGTTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            F GQ     N L   V  G A+  M           +WYG DR  YLGPFS   PSYL+GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+TPE+L K   V F E VWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G P       +Y    F                 +E+KNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:   12 FSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYAT 259          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.024e-63
Identity = 126/194 (64.95%), Postives = 142/194 (73.20%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE 781
            WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPE F + R LEVIH RWA+LGALG +TPE+L  +  V F EPVWFKAGAQIFSEGGLDYLG+P L+HAQ+I+A L  QVVLMGL+EG+R+NG P  GEG   LY    F                 +EIKNGRLAMFS   FF  AIVTGKGP +
Sbjct:   39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGP-AGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQ 231          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.024e-63
Identity = 132/213 (61.97%), Postives = 148/213 (69.48%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGT-TLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+   QV+LMG +EG+R+ G P +GE T  +Y    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:   62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYAT 272          
The following BLAST results are available for this feature:
BLAST of EY661026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_ARATH4.597e-6454.09Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL4.597e-6457.55Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_PETSP6.004e-6461.09Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_NICPL6.004e-6454.09Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_SOYBN6.004e-6457.14Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2A_PYRPY7.841e-6461.97Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_PETSP7.841e-6460.63Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_POLMU7.841e-6455.02Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_CHLMO1.024e-6364.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PINSY1.024e-6361.97Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661026 ID=EY661026; Name=EY661026; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGCAGTTCCAACCGACACAACATCCATAATAACAACTCTCA
GGACAATGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCT
CTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCT
AAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAATGGGAAATGAAC
TGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAG
ACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACAC
TGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTG
AGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACC
CCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGGTTTG
GTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTACTTGG
GAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTGNGATTC
CAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGGCCTCCC
TGGTGTCGGAGAAGGAACGACCCTCTACCTGGTGGCAATATTTTGATCCC
CTTGGNCTTGCTGATGATCCTGTTACGTTTGCTGAAACTCAGGTGAAGAA
ATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTGGNNTTCTTTGNTCN
AGCTATTGTGACAGGCAAGGGTCCCTNAGAACCTCCTGNNACACTTGAGA
CCNTGTTNGCCACATGCTGGGGCTATGCTACCNAGTTGTACCTGGACAAA
ACCCATATGATACTGGTAATCTTGTCAGGGCAAGGAAATATGAAATTCGG
CTTGGAATCCAAAAAAAA
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