EY660028

Overview
NameEY660028
Unique NameEY660028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.558e-12
Identity = 38/110 (34.55%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R
Sbjct:   63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 172

HSP 2 Score: 25.409 bits (54), Expect = 5.558e-12
Identity = 19/49 (38.78%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV E+  GRL M ++  F
Sbjct:  186 YPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGF 224
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.213e-12
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:  253 NPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            +P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

HSP 2 Score: 26.1794 bits (56), Expect = 7.213e-12
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  191 YPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGF 229
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.213e-12
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:  253 NPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            +P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176

HSP 2 Score: 26.1794 bits (56), Expect = 7.213e-12
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  190 YPGGSF-DPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGF 228
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.213e-12
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:  253 NPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            +P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

HSP 2 Score: 26.1794 bits (56), Expect = 7.213e-12
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  191 YPGGSF-DPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGF 229
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.213e-12
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:  253 NPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            +P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176

HSP 2 Score: 26.1794 bits (56), Expect = 7.213e-12
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  190 YPGGSF-DPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGF 228
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.215e-12
Identity = 37/110 (33.64%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG +E  R
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYR 175

HSP 2 Score: 25.409 bits (54), Expect = 7.215e-12
Identity = 17/48 (35.42%), Postives = 21/48 (43.75%), Query Frame = 2 
Query:  626 PGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            P G+  DPL   GTF       D       KV E+  GRL M ++  F
Sbjct:  180 PLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGF 227
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.215e-12
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:  253 NPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            +P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 175

HSP 2 Score: 26.1794 bits (56), Expect = 7.215e-12
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  189 YPGGSF-DPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGF 227
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.221e-12
Identity = 37/110 (33.64%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 165

HSP 2 Score: 25.409 bits (54), Expect = 7.221e-12
Identity = 19/49 (38.78%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV E+  GRL M ++  F
Sbjct:  179 YPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGF 217
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.216e-11
Identity = 36/110 (32.73%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG +E  R
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYR 177

HSP 2 Score: 26.1794 bits (56), Expect = 1.216e-11
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2 
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  191 YPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGF 229
[Close]
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.577e-11
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:  223 PAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGK--------DPAFLTRHREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDF 540
            P VK GG +  P W         LDGSLPGDYGFDPLGL          +P +L      E+I+GR+AM   VG     ++G+       + + WF+ G  P A   +++     +L   ++ LMG+ E +R+ D+
Sbjct:   46 PPVKQGG-VDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLA---YGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDW 176

HSP 2 Score: 30.8018 bits (68), Expect = 1.577e-11
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 2 
Query:  620 SYPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALV 763
            +YPGG FF+PL          +  D   L   K+ E+  GRL M+A++
Sbjct:  201 AYPGGPFFNPL---------GFGKDEKSLKELKLKEVKNGRLAMLAIL 239
The following BLAST results are available for this feature:
BLAST of EY660028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_MAIZE5.558e-1234.55Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC7.213e-1233.33Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB25_NICPL7.213e-1233.33Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC7.213e-1233.33Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC7.213e-1233.33Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB29_MAIZE7.215e-1233.64Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2B_SOLLC7.215e-1233.33Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_CUCSA7.221e-1233.64Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC1.216e-1132.73Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PEA1.577e-1133.82Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660028 ID=EY660028; Name=EY660028; organism=Citrus sinensis; type=EST; length=927bp
TCCTCGCGCGCGCGTCCGTGACAGCCCTTTCTGCACAAGAGAAGTCAAGT
AGAGATCATATCTATGGCGGCTGCAACATCCGTTGCTCCGTTAAACGGAT
TGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCT
GGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCT
TCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCA
TTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGACTACGGATTCGAC
CCACTTGGGCTTGGAAAGGACCCAGCATTCCTGACCCGCCACAGAGAAGC
AGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCG
TCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCT
GGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCT
CCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCTGA
ATCTCAATCAGTTGAATGGGCNACCCCTGGTCAAGACTGCTGAAAACTTT
GCCATGCGACTGGTGAACAAGCTACCCTGGTGGAAAGTTTTTTGATCCCT
TATGTTTGGCTGGAACATTTAAGGATGGTGTCTACTTTCCTGACACTGAN
AAGCTTGACCGGTTCAAAGTTGCTGAGATTTAACCTGGTAGGCTTGGTAT
GGTGGCCCTGGTGATTTTTCTACTTTGAACTGGGCCAGGCAAGACGCCCC
TTGGGGGCTCTTGTTTTGAAAACATGCTTTTGTAAATACTCCCTGATTGG
CGGTAAGCGCGACCCTCGGGGGTAATGGAGTCCCCCCTTGAAAGTCCATT
TGAGGGGGTAAAAAAAAAAAAAAAAAA
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