EY660028
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 5.083e-84 Identity = 133/184 (72.28%), Postives = 143/184 (77.72%), Query Frame = 1 Query: 64 MAAATSVAPLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF-XXXXXXXXXXXXVKTAENFA 603 M ++ A LNGL SSF+ GGKK+QALL T RVT + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFL +REAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF KTAENFA Sbjct: 1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFA 184 HSP 2 Score: 71.633 bits (174), Expect = 5.083e-84 Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 YPGGKFFDPL LAGT +GVY PDT KL+R K+AEI RL M+A++IF Sbjct: 192 YPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 1.920e-83 Identity = 133/183 (72.68%), Postives = 141/183 (77.05%), Query Frame = 1 Query: 70 AATSVAPLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF-XXXXXXXXXXXXVKTAENFA 603 A TS A LNGL SSF+ GG KSQALLA RV L KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFL +REAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF KTAENFA Sbjct: 2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFA 184 HSP 2 Score: 72.7886 bits (177), Expect = 1.920e-83 Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 YPGGKFFDPL LAGT +GVY PDT KL+R KVAEI RL M+A++IF Sbjct: 192 YPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 7.932e-64 Identity = 127/189 (67.20%), Postives = 143/189 (75.66%), Query Frame = 1 Query: 64 MAAATSV-APLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF-XXXXXXXXXXXXVKTAENFA 603 MAAATS A +NG S F++GGKKS Q+LL ++V T PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFL +REAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF +TAENF+ Sbjct: 1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFS 189 HSP 2 Score: 72.0182 bits (175), Expect = 5.367e-12 Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 2 Query: 575 PWSRLLKTLP-CDW*TSYPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 PWSR + YPGGKFFDPL LAGT +GVY PDT KL+R K+AEI RL M+A++IF Sbjct: 180 PWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.542e-21 Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 202 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 537 P + W P PEWLDGSLPGD+GFDPLGLG DP L + +AEL+H RWAM GIF+ + + I W+ AG +L +L+L+GW E +RW D Sbjct: 63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWAD 171 HSP 2 Score: 27.7202 bits (60), Expect = 2.542e-21 Identity = 17/47 (36.17%), Postives = 23/47 (48.94%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALV 763 YPGG +FDPL G K+ + EI GRL M+A++ Sbjct: 196 YPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVM 234
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 5.957e-20 Identity = 62/214 (28.97%), Postives = 86/214 (40.19%), Query Frame = 1 Query: 70 AATSVAPLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLT-------------------------------------------RHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 528 AATS A +S I G + + + G+ R T P K + W P I+P+WLDGSL GDYGFDP GLGK +L R RE ELIHGRWAM A +G + +G+ W +AG + G PFS +L+ ++L++G++E +R Sbjct: 2 AATSAA---AAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 206 HSP 2 Score: 37.7354 bits (86), Expect = 5.957e-20 Identity = 23/49 (46.94%), Postives = 27/49 (55.10%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 YPGGKFFDPL LA D K + ++AEI RL MVA + F Sbjct: 217 YPGGKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGF 256
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 5.965e-20 Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 202 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 537 P + W P P WLDGSLPGD+GFDPLGL DP L +++AEL+H RWAM GIF+ + + I W+ AG +L +L+L+GW E +RW D Sbjct: 63 PDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWAD 171 HSP 2 Score: 27.7202 bits (60), Expect = 5.965e-20 Identity = 17/47 (36.17%), Postives = 23/47 (48.94%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALV 763 YPGG +FDPL G K+ + EI GRL M+A++ Sbjct: 196 YPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVM 234
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.254e-19 Identity = 55/171 (32.16%), Postives = 71/171 (41.52%), Query Frame = 1 Query: 202 PPKKS-----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLT-------------------------------------------RHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 528 PPKKS W P G N PEWLDGS+ GD GFDP GLGK +L R RE ELIHGRWAM +G +A +GI W +AG + G PFS +L+ ++L++G++E +R Sbjct: 43 PPKKSRQVQDDGDRLVWFP----GAN--PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR 207 HSP 2 Score: 38.891 bits (89), Expect = 8.254e-19 Identity = 25/49 (51.02%), Postives = 28/49 (57.14%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 YPGG +FDPL LA D KLD K+AEI RL MVA +IF Sbjct: 218 YPGG-YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIF 256
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.067e-18 Identity = 61/212 (28.77%), Postives = 85/212 (40.09%), Query Frame = 1 Query: 70 AATSVAPLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS--------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLT-------------------------------------------RHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 528 AATS A +S I G + + + ++R T P K W P K +PE+LDGSL GDYGFDP GLGK +L R RE ELIHGRWAM A +G + +G+ W +AG + G PFS +L+ ++L++G++E +R Sbjct: 2 AATSTAA----AASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 203 HSP 2 Score: 35.8094 bits (81), Expect = 3.067e-18 Identity = 22/49 (44.90%), Postives = 26/49 (53.06%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 YPGGKFFDPL LA D K + ++AEI RL MV + F Sbjct: 214 YPGGKFFDPLGLAS---------DPVKKAQLQLAEIKHARLAMVGFLGF 253
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 6.763e-18 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKR 528 P +LDGS PGD+GFD LGLG+ PA L R++E+ELIH RWAM AV GI V +A W +A A PG A P +G+L L + L + +VE +R Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157 HSP 2 Score: 31.187 bits (69), Expect = 6.763e-18 Identity = 21/49 (42.86%), Postives = 25/49 (51.02%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 YPGG F DPL Y D K + KV EI GRL ++A+V F Sbjct: 168 YPGGAF-DPLG---------YSKDPAKFEELKVKEIKNGRLALLAIVGF 206
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.508e-17 Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528 P +L+G PGDYG+D GL DP R+R E+IHGRWAM +G V Q W G+ WF+AG+ +P + S ++LG Q+LLMG VE R Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 177 HSP 2 Score: 32.7278 bits (73), Expect = 2.508e-17 Identity = 22/49 (44.90%), Postives = 27/49 (55.10%), Query Frame = 2 Query: 623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769 YPGG++FDPL LA D V F + KV EI GRL M ++ F Sbjct: 191 YPGGQYFDPLGLA---DDPVTFAE------LKVKEIKNGRLAMFSMFGF 230 The following BLAST results are available for this feature:
BLAST of EY660028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >EY660028 ID=EY660028; Name=EY660028; organism=Citrus sinensis; type=EST; length=927bpback to top |