EY660028

Overview
NameEY660028
Unique NameEY660028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.579e-11
Identity = 39/110 (35.45%), Postives = 54/110 (49.09%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  P DYG+D  GL  DP    ++RE E+IH RWAM   +G    +  A +GI      WF+AGA            +P  +   S  ++   Q++LMG VE  R
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177          

HSP 2 Score: 26.1794 bits (56), Expect = 1.579e-11
Identity = 17/48 (35.42%), Postives = 21/48 (43.75%), Query Frame = 2
Query:  626 PGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            P G+  DPL   G+F       D       KV EI  GRL M ++  F
Sbjct:  182 PLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.579e-11
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVE 519
            P +L G  PGDYG+D  GL  DP    ++RE E+IH RWA+A  +G    +  A +G+      WF+AG+            +P  +   S  ++   Q++LMG VE
Sbjct:   65 PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVE 171          

HSP 2 Score: 28.1054 bits (61), Expect = 1.579e-11
Identity = 17/46 (36.96%), Postives = 22/46 (47.83%), Query Frame = 2
Query:  632 GKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            G+  DPL L G+F       D  +    KV EI  GRL M ++  F
Sbjct:  181 GEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGF 226          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.581e-11
Identity = 38/110 (34.55%), Postives = 51/110 (46.36%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DP    R+RE ELIH RWAM   +G          G  +    WF+AGA            +P  +   +  +    Q++LMG +E  R
Sbjct:   54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR 163          

HSP 2 Score: 22.3274 bits (46), Expect = 1.581e-11
Identity = 20/49 (40.82%), Postives = 23/49 (46.94%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPG + FDPL LA         PDT      KV EI  GRL   ++  F
Sbjct:  177 YPG-ESFDPLGLADD-------PDTFA--ELKVKEIKNGRLASFSMFGF 215          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.050e-11
Identity = 36/111 (32.43%), Postives = 52/111 (46.85%), Query Frame = 1
Query:  253 NPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            +P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+ G+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177          

HSP 2 Score: 26.1794 bits (56), Expect = 2.050e-11
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  191 YPGGSF-DPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGF 229          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.454e-11
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 1
Query:  253 NPEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            +P +L G  PGDYG+D  GL  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177          

HSP 2 Score: 23.8682 bits (50), Expect = 3.454e-11
Identity = 16/48 (33.33%), Postives = 20/48 (41.67%), Query Frame = 2
Query:  626 PGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            P G+  DPL   G+F       D       KV  I  GRL M ++  F
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGF 229          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.479e-11
Identity = 36/110 (32.73%), Postives = 51/110 (46.36%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DP    ++RE E+IH  WAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:    7 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 116          

HSP 2 Score: 25.409 bits (54), Expect = 3.479e-11
Identity = 19/49 (38.78%), Postives = 22/49 (44.90%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV E+  GRL M ++  F
Sbjct:  130 YPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGF 168          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 41/111 (36.94%), Postives = 54/111 (48.65%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            PE+L G  PGDYG+D  GL  DP    R+RE ELIH RWA+   +GI        + G  +    WF+AGA            +   I   S  + L  Q++LMG  E+ R
Sbjct:   51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR 161          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.821e-11
Identity = 36/110 (32.73%), Postives = 52/110 (47.27%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DPA   ++R+ E+IH RW M   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176          

HSP 2 Score: 24.6386 bits (52), Expect = 5.821e-11
Identity = 16/48 (33.33%), Postives = 21/48 (43.75%), Query Frame = 2
Query:  626 PGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            P G+  DPL   G+F       D       +V EI  GRL M ++  F
Sbjct:  181 PLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGF 228          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.556e-11
Identity = 36/110 (32.73%), Postives = 51/110 (46.36%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D   L  DP    ++RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177          

HSP 2 Score: 26.1794 bits (56), Expect = 7.556e-11
Identity = 20/49 (40.82%), Postives = 22/49 (44.90%), Query Frame = 2
Query:  623 YPGGKFFDPLCLAGTFKDGVYFPDTXKLDRFKVAEI*PGRLGMVALVIF 769
            YPGG F DPL LA          D       KV EI  GRL M ++  F
Sbjct:  191 YPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGF 229          
BLAST of EY660028 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1
Query:  256 PEWLDGSLPGDYGFDPLGLGKDPAFLTRHREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 528
            P +L G  PGDYG+D  GL  DP    R+RE E+IH RWAM   +G          G  +    WF+AGA            +P  +   S  ++   Q++LMG+VE  R
Sbjct:   64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173          
The following BLAST results are available for this feature:
BLAST of EY660028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB23_PETSP1.579e-1135.45Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB48_MAIZE1.579e-1134.58Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_CHLRE1.581e-1134.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_NICPL2.050e-1132.43Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_TOBAC3.454e-1133.33Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_CUCSA3.479e-1132.73Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNTE3.497e-1136.94Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP5.821e-1132.73Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_PETSP7.556e-1132.73Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_ORYSJ7.790e-1135.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660028 ID=EY660028; Name=EY660028; organism=Citrus sinensis; type=EST; length=927bp
TCCTCGCGCGCGCGTCCGTGACAGCCCTTTCTGCACAAGAGAAGTCAAGT
AGAGATCATATCTATGGCGGCTGCAACATCCGTTGCTCCGTTAAACGGAT
TGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCT
GGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCT
TCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTGGTGGCAACCTCA
TTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGACTACGGATTCGAC
CCACTTGGGCTTGGAAAGGACCCAGCATTCCTGACCCGCCACAGAGAAGC
AGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCG
TCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCT
GGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCT
CCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCTGA
ATCTCAATCAGTTGAATGGGCNACCCCTGGTCAAGACTGCTGAAAACTTT
GCCATGCGACTGGTGAACAAGCTACCCTGGTGGAAAGTTTTTTGATCCCT
TATGTTTGGCTGGAACATTTAAGGATGGTGTCTACTTTCCTGACACTGAN
AAGCTTGACCGGTTCAAAGTTGCTGAGATTTAACCTGGTAGGCTTGGTAT
GGTGGCCCTGGTGATTTTTCTACTTTGAACTGGGCCAGGCAAGACGCCCC
TTGGGGGCTCTTGTTTTGAAAACATGCTTTTGTAAATACTCCCTGATTGG
CGGTAAGCGCGACCCTCGGGGGTAATGGAGTCCCCCCTTGAAAGTCCATT
TGAGGGGGTAAAAAAAAAAAAAAAAAA
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