EY659545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 312.383 bits (799), Expect = 2.372e-84 Identity = 156/262 (59.54%), Postives = 184/262 (70.23%), Query Frame = 3 Query: 111 MACRLADSMFLFMGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHHAKKTCLTEIQLGILFGKKSLTHLPFCAKQYILIW-PLSTLESIAHWLIWPFDLTKSR 893 MAC LADS+ LF G +Q+P + I SPG+ L L+ K + +R + I AVA+PV P +SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLAW WTGTA+TGFFVIGHDCAH+SFS NKL+ DIVGTLAF+PLIYPYEPWRFKHD+HHAK L E K P K I + P SIAHWL+W FDL K R Sbjct: 1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWKDEFESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFR 262
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 307.375 bits (786), Expect = 7.629e-83 Identity = 162/268 (60.45%), Postives = 192/268 (71.64%), Query Frame = 3 Query: 111 MACRLADSMFLFMGPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHHAKKTCLTEIQLGILFGKKSLTHLPFCAKQYILIW-PLSTLESIAHWLIWPFDLTKSR 893 MA R+ADS+F F GP Q K+ S SPG+ +K LL+KG H+ RC P R I+AVA PVAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+ DIVGTLAFLPL+YPYEPWRFKHD+HHAK L + P K I + P+ SIAHW+ W F+L K R Sbjct: 1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFESSPVMRKAIIFGYGPIRPWLSIAHWVNWHFNLKKFR 268
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 1.700e-82 Identity = 156/263 (59.32%), Postives = 189/263 (71.86%), Query Frame = 3 Query: 111 MACRLADSMFLFMGPHQ-RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHHAKKTCLTEIQLGILFGKKSLTHLPFCAKQYILIW-PLSTLESIAHWLIWPFDLTKSR 893 MA R+ADS+F F GP Q P + SPG+ ++ LL+KG + + I+AV VPVAPPS D+A+ R+Q+AESYGF+QIG+ LP+NVT+KD++D+LPK+VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKL+ DIVGTLAFLPL+YPYEPWRFKHD+HHAK L + P K I + P+ SIAHW+ W F+L K R Sbjct: 1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFDSSPVLRKAIIFGYGPIRPWLSIAHWVNWHFNLRKFR 263
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 9.987e-75 Identity = 142/242 (58.68%), Postives = 176/242 (72.73%), Query Frame = 3 Query: 195 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPSE----DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHHAKKTCLTEIQLGILFGKKSLTHLPFCAKQYILIW-PLSTLESIAHWLIWPFDLTKSR 893 +S G+ +KW+ ++ + H R + +GTR +QAVAVPVA PS D+ + KQ+AE YGF+QIGEPLP++VTM+D+I SLPK+VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+ DIVGTLAF+PLIYPYEPWRFKHD+HH K L E + K+ + P K I + PL T SIAHWL F+L R Sbjct: 27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLKQLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKDFR 268
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 5.189e-31 Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 3 Query: 402 NVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725 ++ ++D+I +LPK+ FE KAW SVL+++ + A+G L I PWY LP+ W WTGTA+TG FV+GHDC H+SF+K + + D+VG +AF PLIYP+ WR HD HH Sbjct: 23 DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHH 130
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 3.194e-30 Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 3 Query: 414 KDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725 +D+I++LP VF D KAW +V+++V LG L I+ APW+LLP+ W +TGTA+TGFFVIGHDC H+SFS+N + D VG + FLP+IYP+ WR H++HH Sbjct: 26 EDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHH 129 HSP 2 Score: 23.0978 bits (48), Expect = 3.194e-30 Identity = 9/28 (32.14%), Postives = 14/28 (50.00%), Query Frame = 2 Query: 734 NMLDGDTAWHPVWKEEFDTSPLLRKAIY 817 N ++ D AW P KEE+ + + Y Sbjct: 133 NRMELDNAWQPWRKEEYQNAGKFMQVTY 160
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12 Identity = 40/115 (34.78%), Postives = 55/115 (47.83%), Query Frame = 3 Query: 384 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725 G P P N+ D+ ++PK + D ++ V+ V + + L W + PL WA GT FV+GHDC H SFS N L +VG L ++ PY WR H HH Sbjct: 99 GAPPPFNLA--DIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHH 211
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12 Identity = 36/111 (32.43%), Postives = 56/111 (50.45%), Query Frame = 3 Query: 396 PENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGL-LMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725 P + ++ + +PK + D +++ V+ V A + + I W PL WA GT FV+GHDC H SFS ++LL ++VG + ++ PY WR H HH Sbjct: 27 PPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHH 137
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12 Identity = 42/129 (32.56%), Postives = 58/129 (44.96%), Query Frame = 3 Query: 384 GEPLPENVTMKDVIDSLPKKVFEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725 G+P + ++ D + F+I D++A W L SY AL + + W+L PL WA GT FV+GHDC H SFS LL +VG + ++ PY WR H HH Sbjct: 13 GDPGAGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHH 141
BLAST of EY659545 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12 Identity = 50/161 (31.06%), Postives = 71/161 (44.10%), Query Frame = 3 Query: 273 SRGTRFIQAVAVPVAPPSEDSADCRKQ--------IAESYG-FRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLGDIVGTLAFLPLIYPYEPWRFKHDKHH 725 S+ + + VAVPV + D R++ + E G F G P P T+ D+ ++PK + + ++ VL V + L + W PL W GT FV+GHDC H SFS N L +VG L ++ PY WR H HH Sbjct: 59 SKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEFFDAGAPPP--FTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHH 217 The following BLAST results are available for this feature:
BLAST of EY659545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16 ZOOMx 1POSITION0
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659545 ID=EY659545; Name=EY659545; organism=Citrus sinensis; type=EST; length=929bpback to top |