EY675615

Overview
NameEY675615
Unique NameEY675615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 1 
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNKKTDW*RFN*LSGAYKGSPGKIAQTPAGTPTTSTAEWPWKSLRGRSRVVHTGR 537
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV++VTK K +             G+      +P  TP +ST+ +P     G S    T R
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTS------------PGTSVPSEASPTATPESSTS-FPSAPASGMSHPPPTAR 119
[Close]
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV++VTK K
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAK 80
The following BLAST results are available for this feature:
BLAST of EY675615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23A_BOVIN2.713e-1234.38UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RD23A_MOUSE1.346e-1143.42UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675615 ID=EY675615; Name=EY675615; organism=Citrus sinensis; type=EST; length=840bp
TCTATATGCTTCCTAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTATCA
ATTATAGATAGACATTGAAAAGACCTTGCGGATCGGAAAACCAAATAAAA
TAGTTGAATTCGAGAGACCCAACGGAACGTAGAAAAAGAAGAAGATGATG
AAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGTGAA
ACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTGTTCAAG
GATCGGATGTTTATCCTGCTGCACAACAGATGCTGATTTATCAGGGGAAA
GTCCTCGAAGATGATACTACACTGGAAGAGAACGAAGTAGCTGAAAATAG
TTTTGTTGTTATTGTGGTTACGAAGAATAAGAAGACCGACTGGTGAAGGT
TCAACTGACTCAGCGGCGCCTACAAAGGGTCCCCAGGTAAAATTGCCCAA
ACCCCTGCAGGGACCCCAACAACAAGTACCGCAGAATGGCCGTGGAAATC
ACTGAGAGGCCGAAGCCGGGTAGTACACACGGGCCGGGCGAGGGGTTAGG
AGTACCACAGATACAGCGACGACAAGGAGTGAGGGTGTTTGGGCTTTCTT
GCCCTAATTCTTTTTCCTNTTAACCATCTCATATTGCCCCCCCCCCCCTC
TCCCTCACTATAGCATAAACCCAACATCATACTAACACAAACCCAATCTC
TACCCCACTCAAGGGCAGAGGAGACGCCCCGGGACGCCAGAAAAAGGAAG
GCAGGAAGAGGAGGAAAGGGAAGGAGAAAGGAGGAAGAAAGCGAAGAGGT
AGGACAGGCAGGGAGTGAGGACAGACAAACAGACAAGGAG
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