EY675615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26 Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNKKTDW*RFN*LSGAYKGSPGKIAQTPAGTPTTS 477 IFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVL+D+TT+EEN+VAENSF+VI++ K+K S A + +Q + P+TS Sbjct: 3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPA--------SAAASSASAGTSQAKSIPPSTS 102
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22 Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNKKTDW*RFN*LSGAYKGSPGKIAQTPAGTPTTSTAEWPWKSL 504 IFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVL+D+TTLEEN V ENSF+VI+++K K + SGA S + T T T P S+ Sbjct: 3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP-------SGASTASAPAPSATQPQTVATPQVSAPTASV 111
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19 Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381 I VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVL+DDTTL+EN+V ENSF+VI++ + K Sbjct: 3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16 Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 1 Query: 160 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381 VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVL+D+T+L EN+V E F+V++++K+K Sbjct: 5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 9.011e-16 Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 160 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381 VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVL+D+TTL EN+V E F+V++++K+K Sbjct: 5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14 Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK-------KTDW*RFN*LSGAYKGSP-GKIAQTPAGTPTTSTAEWP 492 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K T + + SP +AQ PA TP + P Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPTSTP 123
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14 Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14 Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.439e-13 Identity = 35/76 (46.05%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381 + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K Sbjct: 3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12 Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNKKTDW*RFN*LSGAYKGSPGKIAQTPAGTPTTSTA 483 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + + E +FVV++VTK K A +G+ +P P +ST+ Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK------------AGQGTSAPPEASPTAAPESSTS 102 The following BLAST results are available for this feature:
BLAST of EY675615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >EY675615 ID=EY675615; Name=EY675615; organism=Citrus sinensis; type=EST; length=840bpback to top |