EY675337

Overview
NameEY675337
Unique NameEY675337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.122e-13
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  131 SSGKLNREVALKPVSSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAG 436
            ++GK     A  P SS   F    + +WL      A+P YL G  PGD G+D  GL+ DPE  K Y + EL+++RWAMLG +G   PE+  K G       W+ AG
Sbjct:   17 ATGKKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAG 122          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 54/155 (34.84%), Postives = 79/155 (50.97%), Query Frame = 2
Query:   59 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLF 472
            ++++T A AA     +  S+ +T  +  + R  +  PV   A+ ++     W     S +YL+G LPGD GFDPLGL+ DPE        KW    E++N R+AMLG  G + PE+  K G+I  PQ     W+       AG   Y+A + TLF
Sbjct:   10 SSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQL-----WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLF 156          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.271e-13
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  212 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLF 472
            W     S +YL+GSLPGD GFDPLGL+ DPE        +W    E++N R+AMLG VG + PE   K+G+I  PQ     W+       AG   Y+A + TLF
Sbjct:   58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLF 158          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.609e-12
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MA  T   S+  F   A K    +  +TG+     R+   KPV+SS+ +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F + S +F +
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSE 140          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.155e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MAT T   S++ F   A K    S  +TG+     R+ A K  P SS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F + S +F +
Sbjct:    1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSE 142          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.039e-12
Identity = 50/147 (34.01%), Postives = 76/147 (51.70%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 472
            MA  T   S++ F   A K    S  +TG+     R+ A   KPVSSS+ +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F   S +F
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKGGSQIF 140          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.050e-11
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  233 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ--WYDAG 436
            P YLNG + GD G+DP GL + PEN   Y   EL+++RWAMLG  G ++PE   K G    P+  W+  G
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTG 151          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.371e-11
Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 2
Query:   56 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLP-GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MAT T Q SA     + +P     R + G+ G+++    +K    S  +  +      P    +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  K G+         G+A +F + S +F++
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-------KFGEAVWFKAGSQIFQE 139          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.791e-11
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MA  TT  S+    P A K+  L+ SS ++  N +V +       KPVSS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F + S +F +
Sbjct:    1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSE 141          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.791e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCA---SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MA  T   S++ F   A     S  +TG+     R+   K  PVSS + +    + ++L   +  +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+         G+A +F + S +F +
Sbjct:    1 MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGV-------KFGEAVWFKAGSQIFSE 141          
The following BLAST results are available for this feature:
BLAST of EY675337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB2_CHLRE1.122e-1339.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB13_SOLLC3.264e-1334.84Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA7.271e-1343.27Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_TOBAC3.609e-1231.97Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2G_SOLLC6.155e-1232.89Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_NICPL8.039e-1234.01Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB26_ARATH1.050e-1145.71Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_SILPR1.371e-1130.82Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB25_NICPL1.791e-1132.89Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_PETSP1.791e-1131.76Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675337 ID=EY675337; Name=EY675337; organism=Citrus sinensis; type=EST; length=1017bp
CCACGCGTCCGCCACCACTCCTGCACTACCACCCTCATAACTCTCGTCGG
GAAACATGGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCA
TGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAG
GGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAG
CCAAGGGGGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGC
AGCCTCCCCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCC
TGAGAACTTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGG
CCATGTTGGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATT
GGAATTATTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTT
TGCATCATCATCCACCCTTTTTCGTGATCGAGTTCATCTTTGTTTCCACA
ATGTGAAAATAAAAAATGGCAAAACATAAAAAACCCGGAAGTGTCAACAA
AAAACCCCATTTTTTAAGCATTAAAGATTGGCCTCAAAAGAAATTTGGGT
ACCCCAGGGGAAATCTTAAAACCCAACAAACTATTGCCCCCCTTAGATGA
GGCAAAGGAAAAGGGAGTTGCCACAGGGGAGAATGGGCAAGGGTTGGGAA
TCTCAGGGGAATTTTATGGACAACCACATAGAGAACAGGAAAAGGGGCCT
ATTAAAAAACCCCCATGGAAATAATTCTCTATAACCATGTGGACAAACAC
CAAATTTACCAAAACAACATGGGGGGAGAAATTAAAATAAAAAGGGAGTA
GGAACATATTTGTGAAAACCAGTGTTTTTTTCTTTTTTTAAAAACCCGAT
GAAGATATTGTTAAATTTTTTTTATGGAAATGAGAAAATTGATAACCTCG
TATGGATTATATGAAATAGATATGATAGAAACCCCCACACACCCTTGGTG
ACGGGGTGGAAGGGGAG
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