EY675337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 5.668e-66 Identity = 135/214 (63.08%), Postives = 154/214 (71.96%), Query Frame = 2 Query: 56 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRDRVHLCFHNVKIKNGXXXXXXXXXXXXPFFKH*RLASKEIWVPQGKS*NPTNYCPP*MRQRKRELPQGRM 685 MATVTT ASA++FRPC SK RFLTGSSG+LNR+++ + SSA SFKVEAK GEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLF + FH V+I+ P FK L E+ P G NP N+ P +++EL GR+ Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIE-FILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIF-NPLNFAPT-QEAKEKELANGRL 211
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 1.263e-65 Identity = 138/213 (64.79%), Postives = 154/213 (72.30%), Query Frame = 2 Query: 56 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRDRVHLCFHNVKIKNGXXXXXXXXXXXXPFFKH*RLASKEIWVPQGKS*NPTNYCPP*MRQRKRELPQGRM 685 MATVTTQASAA+F PC KSRFL GSSGKLNR VA +PV S SASFKVEAK GEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLF L H V+I+ P FK L + E+ P G NP N+ P + +++E+ GR+ Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILS-HYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIF-NPLNFAPT-LEAKEKEIANGRL 210
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 3.463e-39 Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 2 Query: 167 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYD-AGKAEYFASSSTLFRDRVHLCFHNVKIKNGXXXXXXXXXXXXPFFKH*RLASKEIWVPQGKS*NPTNYCPP*MRQRKRELPQGRM 685 P S+ V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W GK YFASSST RVH+ V+I+ P FK L E P G+ NP N+ P + +++EL GR+ Sbjct: 21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTAL--RVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-GRVFNPLNFAP--LENKEKELANGRL 189
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.250e-30 Identity = 65/126 (51.59%), Postives = 84/126 (66.67%), Query Frame = 2 Query: 104 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 472 A+K+ FL G ++++ +A S A V A + W PG P +L+GSLPGD GFDPLGL DPE+LKW QAELV+SRWAMLG G+ +PE TKIG++N P WY AG+ EYF ++TLF Sbjct: 29 ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLF 154
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.487e-29 Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 2 Query: 107 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 472 +K+ FL G ++++ S+ + V A + W PG P +L+GSLPGD GFDPLGLA DPE+L+W QAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG+ EYF ++TLF Sbjct: 30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLF 154
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.670e-15 Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 65 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSS----ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAG 436 +TT ++ AV +S FLTG + L V + + A+ V K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG Sbjct: 1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAG 129
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.948e-15 Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 2 Query: 80 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS----------FKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAG 436 SAAV +S FLTG G ++ + P+++ AK W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG Sbjct: 5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAG 129
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.768e-15 Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 2 Query: 119 FLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY 448 FL+ + K + + +++ + +W+PG P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE + +W G+A Y Sbjct: 18 FLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATY 129
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.015e-14 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 203 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAG 436 K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAML V+G+ + + +T I W++AG Sbjct: 57 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAG 134
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14 Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 2 Query: 176 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEYFAS 457 ++ S +V EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE + +W G+A Y + Sbjct: 36 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGN 131 The following BLAST results are available for this feature:
BLAST of EY675337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >EY675337 ID=EY675337; Name=EY675337; organism=Citrus sinensis; type=EST; length=1017bpback to top |