EY675337

Overview
NameEY675337
Unique NameEY675337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.791e-11
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MA  TT  S+    P A K+  L+ SS ++  N +V +       KPVSS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F + S +F +
Sbjct:    1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSE 141          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.791e-11
Identity = 49/147 (33.33%), Postives = 74/147 (50.34%), Query Frame = 2
Query:   56 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP---VSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MA  T   S+ V  R   S S  L G +    R+ A KP    SS + +    +  +L  L+   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+         G+A +F + S +F +
Sbjct:    1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSE 140          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.339e-11
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  203 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF-TKIGI-INVPQWYDAG 436
            + +WL   ++  P YL G  PGD G+D  GL+ DPE  K Y + E++++RWA+LG +G+L PE+  T  G+    P W+ AG
Sbjct:   44 RAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAG 125          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.339e-11
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAG 436
            MA  T   S++ F     K    S  +TG+     R+ A K  PVSS + +    + ++L   +  +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+      W  AG
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAG 136          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.990e-11
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MA  T   S++ F   A K   S  L G +    R+ A K   VSSS+ +    +  +L  L+   P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F + S +F D
Sbjct:    1 MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAGWFKAGSQIFSD 141          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            MA  T   S++ F   A K    S  +TG+     R+   K  P+SS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F + S +F +
Sbjct:    1 MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSE 142          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCA----SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAG 436
            MA  T   S++ F   A    S S  +TG+     R+   K  P SSS+ +    + ++L   +  +P+YL G  P D G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + GI      W+ AG
Sbjct:    1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAG 136          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 2
Query:   83 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI-INVPQWYDAG 436
            AA  R   +K+ FL+G  G+      L+ ++++ + ++    +   G             +P+YLNG  PGD G+D  GL+ DPE        E+++ RWAMLG +G + PEV  K +G+    P W+ AG
Sbjct:    7 AAASRAVVAKTPFLSGQ-GRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAG 136          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  149 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            R+ A K VSS + +    + ++L   +   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+         G+A +F + S +F +
Sbjct:   16 RKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEASWFKAGSQIFSE 120          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  122 LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            + G++    R+ A K VSS + +    + ++L   +   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+         G+A +F + S +F +
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-------KFGEAVWFKAGSQIFSE 130          
The following BLAST results are available for this feature:
BLAST of EY675337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB21_TOBAC1.791e-1132.89Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ORYSJ1.791e-1133.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_CHLMO2.339e-1141.46Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP2.339e-1133.82Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT3.990e-1133.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC5.211e-1131.54Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_PETSP5.211e-1133.82Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_HORVU5.211e-1132.06Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SOYBN5.211e-1133.93Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_CUCSA5.211e-1132.23Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675337 ID=EY675337; Name=EY675337; organism=Citrus sinensis; type=EST; length=1017bp
CCACGCGTCCGCCACCACTCCTGCACTACCACCCTCATAACTCTCGTCGG
GAAACATGGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCA
TGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAG
GGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAG
CCAAGGGGGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGC
AGCCTCCCCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCC
TGAGAACTTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGG
CCATGTTGGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATT
GGAATTATTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTT
TGCATCATCATCCACCCTTTTTCGTGATCGAGTTCATCTTTGTTTCCACA
ATGTGAAAATAAAAAATGGCAAAACATAAAAAACCCGGAAGTGTCAACAA
AAAACCCCATTTTTTAAGCATTAAAGATTGGCCTCAAAAGAAATTTGGGT
ACCCCAGGGGAAATCTTAAAACCCAACAAACTATTGCCCCCCTTAGATGA
GGCAAAGGAAAAGGGAGTTGCCACAGGGGAGAATGGGCAAGGGTTGGGAA
TCTCAGGGGAATTTTATGGACAACCACATAGAGAACAGGAAAAGGGGCCT
ATTAAAAAACCCCCATGGAAATAATTCTCTATAACCATGTGGACAAACAC
CAAATTTACCAAAACAACATGGGGGGAGAAATTAAAATAAAAAGGGAGTA
GGAACATATTTGTGAAAACCAGTGTTTTTTTCTTTTTTTAAAAACCCGAT
GAAGATATTGTTAAATTTTTTTTATGGAAATGAGAAAATTGATAACCTCG
TATGGATTATATGAAATAGATATGATAGAAACCCCCACACACCCTTGGTG
ACGGGGTGGAAGGGGAG
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