EY675337

Overview
NameEY675337
Unique NameEY675337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.805e-11
Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  113 SRFLTGSSGKLNREVALKPVSSSAS-----FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            S+ L G+   + +    K V+SS S      +V+  G +     SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+         G+A +F + S +F +
Sbjct:   26 SQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSG--ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-------KFGEAVWFKAGSQIFSE 143          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.805e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  230 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+         G+A +F + S +F D
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSD 141          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.805e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  230 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRD 478
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+         G+A +F + S +F D
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIFSD 141          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  230 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKAEYFA 454
            +P YL G  PGD G+D  GL+ DP+    Y + EL+++RWA+LG +G+L PE+ ++   +    P W+ AG A+ FA
Sbjct:   50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFA 125          
The following BLAST results are available for this feature:
BLAST of EY675337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB28_PEA6.805e-1133.07Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH6.805e-1139.76Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.805e-1139.76Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_DUNTE8.888e-1141.56Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675337 ID=EY675337; Name=EY675337; organism=Citrus sinensis; type=EST; length=1017bp
CCACGCGTCCGCCACCACTCCTGCACTACCACCCTCATAACTCTCGTCGG
GAAACATGGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCA
TGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAG
GGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAG
CCAAGGGGGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGC
AGCCTCCCCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCC
TGAGAACTTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGG
CCATGTTGGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATT
GGAATTATTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTT
TGCATCATCATCCACCCTTTTTCGTGATCGAGTTCATCTTTGTTTCCACA
ATGTGAAAATAAAAAATGGCAAAACATAAAAAACCCGGAAGTGTCAACAA
AAAACCCCATTTTTTAAGCATTAAAGATTGGCCTCAAAAGAAATTTGGGT
ACCCCAGGGGAAATCTTAAAACCCAACAAACTATTGCCCCCCTTAGATGA
GGCAAAGGAAAAGGGAGTTGCCACAGGGGAGAATGGGCAAGGGTTGGGAA
TCTCAGGGGAATTTTATGGACAACCACATAGAGAACAGGAAAAGGGGCCT
ATTAAAAAACCCCCATGGAAATAATTCTCTATAACCATGTGGACAAACAC
CAAATTTACCAAAACAACATGGGGGGAGAAATTAAAATAAAAAGGGAGTA
GGAACATATTTGTGAAAACCAGTGTTTTTTTCTTTTTTTAAAAACCCGAT
GAAGATATTGTTAAATTTTTTTTATGGAAATGAGAAAATTGATAACCTCG
TATGGATTATATGAAATAGATATGATAGAAACCCCCACACACCCTTGGTG
ACGGGGTGGAAGGGGAG
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