EY675175

Overview
NameEY675175
Unique NameEY675175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.144e-20
Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            M+++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.330e-20
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 261
            M+++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL
Sbjct:   58 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVL 146          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 5.680e-20
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            MR++H  RN+  CP VN+DK W++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.418e-20
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            MR FH   NK++CP +NVD LWS+V ++V+A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   58 MRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.689e-20
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            MR FH   NK++CP +NVD LWS+V ++++A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   58 MRVFHLKANKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: R27A1_ARATH (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana GN=RPL27AA PE=5 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.689e-20
Identity = 54/92 (58.70%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA*VY 276
            MRYFH LRNKF+C IVN+DKLWSMV                          LGKG LPEN+PVVVKAKLVS T EKKIKEAG AVVLT  +Y
Sbjct:   39 MRYFHKLRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLTFLLY 104          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.158e-19
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            MR FH   NK++CP +NVD LWS+V ++V    K   + + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   58 MRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.280e-19
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            MR+FH LRN    PI+N++KLW++VP E + K    A+ +  P+ID+   GY K+LGKG LP+  P+VV+A+ VS  AE+KIKEAGG + L A
Sbjct:   58 MRHFHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRARYVSAEAERKIKEAGGVIELVA 149          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 8.202e-19
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            MR++H  +N+  CP +N+DKLW++V ++ +   AK  +   P+ID    GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148          
BLAST of EY675175 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.386e-18
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MRYFHTLRNKFHCPIVNVDKLWSMVPQEVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 267
            MRYFH  +  F  P++N+DKLW+++P++ + +    ASK+  P+ID    GY K+LGKG +P N PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct:   58 MRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149          
The following BLAST results are available for this feature:
BLAST of EY675175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL27A_HUMAN1.144e-2052.1760S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
RL27A_PANTR3.330e-2052.2260S ribosomal protein L27a OS=Pan troglodytes GN=R... [more]
RL27A_MOUSE5.680e-2052.1760S ribosomal protein L27a OS=Mus musculus GN=Rpl2... [more]
R27A2_ENTHI7.418e-2051.6160S ribosomal protein L27a-2/4 OS=Entamoeba histol... [more]
R27A1_ENTHI9.689e-2050.5460S ribosomal protein L27a-1 OS=Entamoeba histolyt... [more]
R27A1_ARATH9.689e-2058.70Putative 60S ribosomal protein L27a-1 OS=Arabidops... [more]
R27A3_ENTHI2.158e-1951.6160S ribosomal protein L27a-3 OS=Entamoeba histolyt... [more]
RL28_NEUCR6.280e-1950.5460S ribosomal protein L28 OS=Neurospora crassa GN=... [more]
RL27A_XENLA8.202e-1950.0060S ribosomal protein L27a OS=Xenopus laevis GN=rp... [more]
RL28_YEAST2.386e-1849.4660S ribosomal protein L28 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-B06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675175 ID=EY675175; Name=EY675175; organism=Citrus sinensis; type=EST; length=435bp
ATGAGGTACTTCCACACACTGCGTAATAAATTTCATTGCCCAATTGTGAA
CGTCGACAAGCTTTGGTCGATGGTACCTCAGGAGGTCAAAGCCAAGGCTT
CCAAAGACAATGTGCCAATGATCGATGTGACTCAGTTTGGCTACTTTAAG
GTTTTGGGTAAGGGCGTTTTGCCTGAGAACCAACCCGTTGTGGTGAAGGC
CAAGCTTGTTTCCAAGACAGCCGAGAAGAAAATTAAAGAAGCTGGTGGAG
CTGTTGTGCTTACTGCTTAGGTTTACTGTTATTGTTTTTAGAAAATTTTT
GTGATATTTTGGATTTCAGTTTTTGAATATTTGACTATTTTTACATGTAG
TTTTGGATGTTTATGTTATCATTTGAAACTTTTTGCTTTATATTGAGACC
TGTTATTGATTAAAAAAAAAAAAAAAAAAAAAAAA
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