EY702704

Overview
NameEY702704
Unique NameEY702704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y5337_MYCVP (Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_5337 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 57/171 (33.33%), Postives = 84/171 (49.12%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   FG  GV++  + SA ++ V  + SAG+     +    N+ + L   A+ G +V+G         +++I    P ++V+GSEG GL  LV  +C  +V IP   P                             ESLN SVAAGV+L
Sbjct:  163 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQVVGLDADGDTT-VDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGP----------------------------TESLNASVAAGVVL 304          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y3610_MYCBO (Uncharacterized tRNA/rRNA methyltransferase Mb3610c OS=Mycobacterium bovis GN=Mb3610c PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 58/171 (33.92%), Postives = 86/171 (50.29%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++      ++V+GSEG GL  LV ++C  +V IP                       A Q       ESLN SVAAGV+L
Sbjct:  159 PALLVALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGG-GTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP----------------------MAAQ------AESLNASVAAGVVL 300          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: YACO_BACSU (Putative trmH family tRNA/rRNA methyltransferase yacO OS=Bacillus subtilis GN=yacO PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.396e-14
Identity = 54/171 (31.58%), Postives = 86/171 (50.29%), Query Frame = 1
Query:   19 WVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 531
            ++ LDE+ DP NLG I+R+A   GA G+V+  + +  L+  V+KAS G++E + +    N+ + L    E G  V+G   S++      +    P  LV+GSEG G+  LV+  C  L+++P        AG+                     V SLN SVAAG+L++ +
Sbjct:   99 FLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARE-DFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_PSESM (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pseudomonas syringae pv. tomato GN=rlmB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 58/171 (33.92%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P L + LD VTDP NLG  +R+A   GA  V++    SA L+  V K + G+ E++ L    N+ + L    + G  V+ G+     V L +     PTI+++G+EG G+R L    C +LVR+P        AG                     +V SLNVSVA GV L
Sbjct:   96 PPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVV-GTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLP-------MAG---------------------SVSSLNVSVATGVCL 237          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y572_MYCA9 (Uncharacterized tRNA/rRNA methyltransferase MAB_0572 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=MAB_0572 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.382e-14
Identity = 56/171 (32.75%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   FG  GVV+  + SA ++ V  + SAG+   + +    N+ + L    + G  ++G         L+ +       +V+GSEG GL  LV ++C  +V IP   P                            VESLN SVAAGV+L
Sbjct:  166 PALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGITIVGLDAGGD-TELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGP----------------------------VESLNASVAAGVVL 307          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_ACIAD (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Acinetobacter sp. (strain ADP1) GN=rlmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.382e-14
Identity = 55/172 (31.98%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   13 SLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGW-RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLH 525
            +L +ALD+VTDP NLG  IR+A   G + V++    SA L+    K +AG  E V+     N+ + L     + + +V+G  +  KA+P+ +        +V+G+E TGLRP+ +  C   V IP                 +GN            ++SLNVSVAAG+ L+
Sbjct:   97 ALLLALDQVTDPHNLGACIRTAAAMGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLDEKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIP----------------MSGN------------LQSLNVSVAAGMALY 240          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_PSEAE (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pseudomonas aeruginosa GN=rlmB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            L +ALD VTDP NLG  +R+A   G   V++    SA L+  V K + G+ E++ L    N+ + L    + G  V+ G+       L ++    PT+LV+G+EG G+R L    C  L R+P        AG                     +V SLNVSVA GV L  ++
Sbjct:   98 LLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVV-GTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLP-------MAG---------------------SVSSLNVSVATGVCLFEIL 241          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_PSEPK (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pseudomonas putida (strain KT2440) GN=rlmB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            P L + LD VTDP NLG  +R+A   GA+ V++    SA L+ VV K + G+ E++ L    N+ + L    + G  V+G +  ++     +   G P ++++G+EG G+R L    C  LV++P        AG                     +V SLNVSVA GV L   V
Sbjct:   96 PPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQQDLTG-PLVMIMGAEGKGMRRLTREHCDFLVKLP-------MAG---------------------SVSSLNVSVATGVCLFEAV 241          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_VIBPA (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio parahaemolyticus GN=rlmB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.633e-13
Identity = 54/179 (30.17%), Postives = 86/179 (48.04%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 549
            L + LD VTDP NLG  +R+A   G + +++    SAP++  VSK + G+ E+V L    N+ + + +  E G W V  G+       + +     P  +V+G+EG G+R L   +C  L++IP        AG                     +V SLNVSVA+G+ L   V  +++
Sbjct:   97 LLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFV--GTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MAG---------------------SVSSLNVSVASGICLFEAVRQRLA 245          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAHJ (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 1
Query:   22 VALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV--GHQVSNNS 558
            V LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G+++ V +    N+ + +    E+G+ V  G+ +  A    ++    P  +V+GSEG G+  LV+  C   ++IP         G                      V SLN SVAA ++++ +    HQV +N+
Sbjct:   98 VILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWV-AGAEADNATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIP-------MVGH---------------------VNSLNASVAASLMMYEVYRKRHQVGDNA 249          
The following BLAST results are available for this feature:
BLAST of EY702704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
Y5337_MYCVP7.404e-1633.33Uncharacterized tRNA/rRNA methyltransferase Mvan_5... [more]
Y3610_MYCBO7.404e-1633.92Uncharacterized tRNA/rRNA methyltransferase Mb3610... [more]
YACO_BACSU1.396e-1431.58Putative trmH family tRNA/rRNA methyltransferase y... [more]
RLMB_PSESM1.824e-1433.9223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
Y572_MYCA92.382e-1432.75Uncharacterized tRNA/rRNA methyltransferase MAB_05... [more]
RLMB_ACIAD2.382e-1431.9823S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_PSEAE1.182e-1332.3723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_PSEPK1.544e-1332.0023S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_VIBPA2.633e-1330.1723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAHJ4.492e-1329.28Putative trmH family tRNA/rRNA methyltransferase O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702704 ID=EY702704; Name=EY702704; organism=Citrus sinensis; type=EST; length=876bp
TGAAGATTCCCCTCTCTTTGGGTAGCACTGGATGAGGTGACAGATCCTCA
AAATTTGGGGGTCATCATTAGGTCTGCTTACTTCTTTGGAGCTTCAGGGG
TGGTTTTGTGTGCAAAAAATTCAGCACCATTGAGTGGTGTTGTGAGCAAG
GCTAGTGCAGGGTCACTTGAATTGGTGGAGCTGAGGTACTGTAACAATAT
GATGCAGTTCTTGGTATCATCAGCTGAAAATGGCTGGCGAGTCCTTGGCG
GTTCAGTTTCTTCAAAAGCAGTTCCCTTGAATGAGATTCCTCCTGGTCAG
CCAACTATTCTAGTTTTGGGCAGTGAGGGCACAGGATTGAGGCCTTTGGT
GGAGAGATCATGTACACATTTGGTTAGGATCCCTGGAAACATTCCAGTTG
ATGTAACTGCTGGAGAAATTGATGATGTGGATGCTAATGGAAATCATGGG
TCAGCAGAACAGTTCCAGTCATTTATGGCTGTGGAGAGCTTGAATGTCAG
TGTTGCTGCTGGTGTGCTGCTTCACCACTTAGTTGGGCACCAGGTCAGTA
ATAACAGCCACATAGAGGATAGTTCGACTGCAACAGTTGATTAAGCAGGG
TGAGCGGGGAAGAAAAGAATCACATTTTGTGGTTCATGCTGCTGGATGCA
AAAATTGGGCAGGGTCTAAAATGATTCACTGAGCTTTTGCAAATTGCGAC
GAAACAGGAGCTACATTCCTCAGGAAATGGCTAAGTCGTTTATTGAAAAC
GCAAGGAGAGCCCGGTTGGGACAACTTGGCAGTATGTCTCAAAGTTTTCA
CAGGCTGAAGGAAGCCCATTTCTTCAAACCTTCCCAAATCTTGGGGAAGG
GAAACAGTTGCTTCCTAAATTAATTC
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