EY702704

Overview
NameEY702704
Unique NameEY702704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_VIBCH (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio cholerae GN=rlmB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 57/180 (31.67%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 552
            L + LD VTDP NLG  +R+A   G + V++    SAPL+  VSK + G+ E V L    N+ + + +  E G W V  G+       + +        +V+G+EG G+R L   +C  L++IP        AG                     +V SLNVSVA GV L   V  +++N
Sbjct:   97 LLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV--GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP-------MAG---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAS1 (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP2224 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.001e-12
Identity = 38/119 (31.93%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G+++ + +    N+   + +  +NG+ ++ G+ +  +    E+  G P  +V+GSEG G+  LV+  C   + IP
Sbjct:  100 LDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDNGYWIV-GTEAENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_VIBVY (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio vulnificus (strain YJ016) GN=rlmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 55/180 (30.56%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 552
            L + LD VTDP NLG  +R+A   G + V++    SAP++  VSK + G+ E V L    N+ + +    E G W V  G+       + +        +V+G+EG G+R L   +C  L++IP        AG                     AV SLNVSVA+G+ L   V  ++++
Sbjct:   97 LLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIV--GTAGEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP-------MAG---------------------AVSSLNVSVASGICLFEAVRQRLAS 246          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_VIBVU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Vibrio vulnificus GN=rlmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 55/180 (30.56%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 552
            L + LD VTDP NLG  +R+A   G + V++    SAP++  VSK + G+ E V L    N+ + +    E G W V  G+       + +        +V+G+EG G+R L   +C  L++IP        AG                     AV SLNVSVA+G+ L   V  ++++
Sbjct:   97 LLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIV--GTAGEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP-------MAG---------------------AVSSLNVSVASGICLFEAVRQRLAS 246          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_COXBU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Coxiella burnetii GN=rlmB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 54/174 (31.03%), Postives = 81/174 (46.55%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 531
            P+L + LD V DP NLG  +RSA  FG   V+     +  ++ VV K + G+ E+       N+ + +    + G  ++G +V ++ + + EI       +VLGSEG GLR L +  C  L +IP                     GS         VESLNVSVA G+ L+ +
Sbjct:   96 PALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP-------------------LRGS---------VESLNVSVACGICLYEV 240          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_NEIMB (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Neisseria meningitidis serogroup B GN=rlmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 55/185 (29.73%), Postives = 79/185 (42.70%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHI 564
            P L + LD +TDP NLG  +R+A   G   V+     SA L+  VSK + G+ E V      N+ + L    E G  ++G  +S ++  L           V+G+EG G+R L    C  LV IP                             F  VES+NVSV+AG++L      +V  N  +
Sbjct:   95 PPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGES-DLYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP----------------------------MFGTVESMNVSVSAGMVLSETRRQRVLKNEKV 250          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_CHRVO (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Chromobacterium violaceum GN=rlmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 55/172 (31.98%), Postives = 74/172 (43.02%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P L + LD VTDP NLG  +R A   GA  V+     SA L+  VSK + G+ E+V      N+ + L    + G W  + G+       L       P   V+G+EG G+R L    C  LV IP                             F  VESLNVSV++G++L
Sbjct:   95 PPLLLILDGVTDPHNLGACLRVADAMGAHAVIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVW--IAGTTMEADTDLYHFDASGPLAWVMGAEGEGMRRLTREHCDVLVSIP----------------------------MFGTVESLNVSVSSGMVL 236          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_SHEON (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Shewanella oneidensis GN=rlmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 57/170 (33.53%), Postives = 75/170 (44.12%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            LD VTDP NLG  +R+A   G  G+++   NS  L+ VVSK + G+ E V L    N+ + +    E G W V  G+       L +     P  + +G+EG GLR L    C  LV IP +                   GS         V SLNVSVA G+ L   V
Sbjct:  102 LDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIV--GTAGEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMS-------------------GS---------VSSLNVSVATGICLFEAV 241          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_BURSP (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Burkholderia sp. GN=rlmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 56/173 (32.37%), Postives = 80/173 (46.24%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            L +ALD VTDP NLG  +R A   GA  V+   + +A L+   +KA+ G+ E V      N+ + L +    G +V+ G+       L +I       LV+G+EG G+R L   +C  +VRIP        AG                      V+SLNVSVA+G+ L   V
Sbjct:   97 LLLALDGVTDPHNLGACLRVADGAGAHAVIAPRRRAAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVI-GTADDATTSLFDIQLDGALALVMGAEGAGMRRLTREACDEVVRIP-------LAGH---------------------VQSLNVSVASGICLFEAV 240          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_NEIMA (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Neisseria meningitidis serogroup A GN=rlmB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 55/182 (30.22%), Postives = 77/182 (42.31%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 555
            P L + LD +TDP NLG  +R+A   G   V+     SA L+  VSK ++G+ E V      N+ + L    E G  ++G  +   A  L           V+G+EG G+R L    C  LV IP                             F  VES+NVSV+AG++L      +V  N
Sbjct:   95 PPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNA-DLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP----------------------------MFGTVESMNVSVSAGMVLSETRRQRVLKN 247          
The following BLAST results are available for this feature:
BLAST of EY702704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RLMB_VIBCH4.492e-1331.6723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAS11.001e-1231.93Putative trmH family tRNA/rRNA methyltransferase O... [more]
RLMB_VIBVY2.229e-1230.5623S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_VIBVU2.229e-1230.5623S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_COXBU3.803e-1231.0323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_NEIMB6.486e-1229.7323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_CHRVO6.486e-1231.9823S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_SHEON8.471e-1233.5323S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_BURSP8.471e-1232.3723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_NEIMA1.106e-1130.2223S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702704 ID=EY702704; Name=EY702704; organism=Citrus sinensis; type=EST; length=876bp
TGAAGATTCCCCTCTCTTTGGGTAGCACTGGATGAGGTGACAGATCCTCA
AAATTTGGGGGTCATCATTAGGTCTGCTTACTTCTTTGGAGCTTCAGGGG
TGGTTTTGTGTGCAAAAAATTCAGCACCATTGAGTGGTGTTGTGAGCAAG
GCTAGTGCAGGGTCACTTGAATTGGTGGAGCTGAGGTACTGTAACAATAT
GATGCAGTTCTTGGTATCATCAGCTGAAAATGGCTGGCGAGTCCTTGGCG
GTTCAGTTTCTTCAAAAGCAGTTCCCTTGAATGAGATTCCTCCTGGTCAG
CCAACTATTCTAGTTTTGGGCAGTGAGGGCACAGGATTGAGGCCTTTGGT
GGAGAGATCATGTACACATTTGGTTAGGATCCCTGGAAACATTCCAGTTG
ATGTAACTGCTGGAGAAATTGATGATGTGGATGCTAATGGAAATCATGGG
TCAGCAGAACAGTTCCAGTCATTTATGGCTGTGGAGAGCTTGAATGTCAG
TGTTGCTGCTGGTGTGCTGCTTCACCACTTAGTTGGGCACCAGGTCAGTA
ATAACAGCCACATAGAGGATAGTTCGACTGCAACAGTTGATTAAGCAGGG
TGAGCGGGGAAGAAAAGAATCACATTTTGTGGTTCATGCTGCTGGATGCA
AAAATTGGGCAGGGTCTAAAATGATTCACTGAGCTTTTGCAAATTGCGAC
GAAACAGGAGCTACATTCCTCAGGAAATGGCTAAGTCGTTTATTGAAAAC
GCAAGGAGAGCCCGGTTGGGACAACTTGGCAGTATGTCTCAAAGTTTTCA
CAGGCTGAAGGAAGCCCATTTCTTCAAACCTTCCCAAATCTTGGGGAAGG
GAAACAGTTGCTTCCTAAATTAATTC
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