EY702704

Overview
NameEY702704
Unique NameEY702704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_HAEIN (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Haemophilus influenzae GN=rlmB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 54/179 (30.17%), Postives = 79/179 (44.13%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 552
            L + LD VTDP NLG  +R+A   GA  V++    SA L+ +  K + G+ E V L    N+ + L    +N    + G+       + +     P  LV+G+EG G+R L    C  L+ IP        AG                     +V SLNVSVA GV L  +V  ++ +
Sbjct:   96 LLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIP-------MAG---------------------SVSSLNVSVATGVCLFEIVRQRLGS 246          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_YERPE (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Yersinia pestis GN=rlmB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 57/172 (33.14%), Postives = 76/172 (44.19%), Query Frame = 1
Query:   22 VALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            + LD VTDP NLG  +RSA   G   V++    SA L+ +  K ++G+ E V L    N+ + L V    N W V  G+       L +     P  LV+G+EG G+R L    C  L+ IP        AG                     +V SLNVSVA GV L  +V
Sbjct:   98 LVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIV--GTAGEADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIP-------MAG---------------------SVSSLNVSVATGVCLFEVV 239          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAW (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain MW2) GN=MW0487 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:  100 LDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAS (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:  100 LDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAR (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:  100 LDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAN (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain N315) GN=SA0490 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:  100 LDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAM (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:  100 LDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAE (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:  100 LDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: TRMHL_STAAC (Putative trmH family tRNA/rRNA methyltransferase OS=Staphylococcus aureus (strain COL) GN=SACOL0578 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   28 LDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 384
            LD + DP NLG I+R+A   G  GV++  + S  L+  V+KAS G++E V +    N+ + +    +NG+ V  G+ ++ A     +       +V+GSEG G+  LV   C   ++IP
Sbjct:  100 LDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIP 217          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_RALSO (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Ralstonia solanacearum GN=rlmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 57/175 (32.57%), Postives = 77/175 (44.00%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            P L + LD VTDP NLG  +R A   GA  V+     S  ++  V+K ++G+ E V      N+ + L    + G  V+ G+       L       P  LV+G+EG G+R L   +C  LV IP        AG                     +VESLNVSVA+GV L   V
Sbjct:   95 PPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVI-GTADEAEQDLYRADFKGPIALVMGAEGEGMRRLTRETCDTLVSIP-------MAG---------------------SVESLNVSVASGVCLFEAV 240          
The following BLAST results are available for this feature:
BLAST of EY702704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RLMB_HAEIN1.106e-1130.1723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_YERPE1.445e-1133.1423S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
TRMHL_STAAW3.219e-1132.77Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAS3.219e-1132.77Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAR3.219e-1132.77Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAN3.219e-1132.77Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAM3.219e-1132.77Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAE3.219e-1132.77Putative trmH family tRNA/rRNA methyltransferase O... [more]
TRMHL_STAAC3.219e-1132.77Putative trmH family tRNA/rRNA methyltransferase O... [more]
RLMB_RALSO3.219e-1132.5723S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702704 ID=EY702704; Name=EY702704; organism=Citrus sinensis; type=EST; length=876bp
TGAAGATTCCCCTCTCTTTGGGTAGCACTGGATGAGGTGACAGATCCTCA
AAATTTGGGGGTCATCATTAGGTCTGCTTACTTCTTTGGAGCTTCAGGGG
TGGTTTTGTGTGCAAAAAATTCAGCACCATTGAGTGGTGTTGTGAGCAAG
GCTAGTGCAGGGTCACTTGAATTGGTGGAGCTGAGGTACTGTAACAATAT
GATGCAGTTCTTGGTATCATCAGCTGAAAATGGCTGGCGAGTCCTTGGCG
GTTCAGTTTCTTCAAAAGCAGTTCCCTTGAATGAGATTCCTCCTGGTCAG
CCAACTATTCTAGTTTTGGGCAGTGAGGGCACAGGATTGAGGCCTTTGGT
GGAGAGATCATGTACACATTTGGTTAGGATCCCTGGAAACATTCCAGTTG
ATGTAACTGCTGGAGAAATTGATGATGTGGATGCTAATGGAAATCATGGG
TCAGCAGAACAGTTCCAGTCATTTATGGCTGTGGAGAGCTTGAATGTCAG
TGTTGCTGCTGGTGTGCTGCTTCACCACTTAGTTGGGCACCAGGTCAGTA
ATAACAGCCACATAGAGGATAGTTCGACTGCAACAGTTGATTAAGCAGGG
TGAGCGGGGAAGAAAAGAATCACATTTTGTGGTTCATGCTGCTGGATGCA
AAAATTGGGCAGGGTCTAAAATGATTCACTGAGCTTTTGCAAATTGCGAC
GAAACAGGAGCTACATTCCTCAGGAAATGGCTAAGTCGTTTATTGAAAAC
GCAAGGAGAGCCCGGTTGGGACAACTTGGCAGTATGTCTCAAAGTTTTCA
CAGGCTGAAGGAAGCCCATTTCTTCAAACCTTCCCAAATCTTGGGGAAGG
GAAACAGTTGCTTCCTAAATTAATTC
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