EY702704

Overview
NameEY702704
Unique NameEY702704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_PASMU (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Pasteurella multocida GN=rlmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 54/180 (30.00%), Postives = 81/180 (45.00%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFL--VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 549
            L + LD VTDP NLG  +R+A   G   V++    SA L+ +  K + G+ E+V L    N+ + L  +    N W V     ++  +   ++  G    LV+G+EG G+R L    C  L+ IP        AG                     +V SLNVSVA GV L  +V  +++
Sbjct:   96 LLLVLDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTLYQTQLTGG--LALVMGAEGEGMRRLTREHCDQLISIP-------MAG---------------------SVSSLNVSVATGVCLFEIVRQRLA 245          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: RLMB_XANCP (23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Xanthomonas campestris pv. campestris GN=rlmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 58/175 (33.14%), Postives = 76/175 (43.43%), Query Frame = 1
Query:   13 SLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            +L + LD V DP NLG  +RSA   G + VV+    SA ++  V K SAG+ + + +    N+ + L    + G W  L G        L  +       LVLG EG GLR L    C  LV+IP  +P D                          +ESLNVSVA GV L   V
Sbjct:   99 ALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVW--LYGLAGEAEASLYSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIP--MPGD--------------------------IESLNVSVATGVTLFEAV 243          
The following BLAST results are available for this feature:
BLAST of EY702704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RLMB_PASMU5.491e-1130.0023S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]
RLMB_XANCP7.171e-1133.1423S rRNA (guanosine-2'-O-)-methyltransferase rlmB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702704 ID=EY702704; Name=EY702704; organism=Citrus sinensis; type=EST; length=876bp
TGAAGATTCCCCTCTCTTTGGGTAGCACTGGATGAGGTGACAGATCCTCA
AAATTTGGGGGTCATCATTAGGTCTGCTTACTTCTTTGGAGCTTCAGGGG
TGGTTTTGTGTGCAAAAAATTCAGCACCATTGAGTGGTGTTGTGAGCAAG
GCTAGTGCAGGGTCACTTGAATTGGTGGAGCTGAGGTACTGTAACAATAT
GATGCAGTTCTTGGTATCATCAGCTGAAAATGGCTGGCGAGTCCTTGGCG
GTTCAGTTTCTTCAAAAGCAGTTCCCTTGAATGAGATTCCTCCTGGTCAG
CCAACTATTCTAGTTTTGGGCAGTGAGGGCACAGGATTGAGGCCTTTGGT
GGAGAGATCATGTACACATTTGGTTAGGATCCCTGGAAACATTCCAGTTG
ATGTAACTGCTGGAGAAATTGATGATGTGGATGCTAATGGAAATCATGGG
TCAGCAGAACAGTTCCAGTCATTTATGGCTGTGGAGAGCTTGAATGTCAG
TGTTGCTGCTGGTGTGCTGCTTCACCACTTAGTTGGGCACCAGGTCAGTA
ATAACAGCCACATAGAGGATAGTTCGACTGCAACAGTTGATTAAGCAGGG
TGAGCGGGGAAGAAAAGAATCACATTTTGTGGTTCATGCTGCTGGATGCA
AAAATTGGGCAGGGTCTAAAATGATTCACTGAGCTTTTGCAAATTGCGAC
GAAACAGGAGCTACATTCCTCAGGAAATGGCTAAGTCGTTTATTGAAAAC
GCAAGGAGAGCCCGGTTGGGACAACTTGGCAGTATGTCTCAAAGTTTTCA
CAGGCTGAAGGAAGCCCATTTCTTCAAACCTTCCCAAATCTTGGGGAAGG
GAAACAGTTGCTTCCTAAATTAATTC
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