CX078059

Overview
NameCX078059
Unique NameCX078059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078059 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 60/240 (25.00%), Postives = 107/240 (44.58%), Query Frame = 1
Query:   97 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKH---GRPITLPQLVSALEI---NPTKADGLFKLMRLLVHTGFFSTANVXXXXXXXXXXYALTLTSKLFLKDKPYCLSPVVLTLTDPVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMF 798
            EA  +  ++    +   +LK A+EL + EV+      G+ +   ++V+ L +   NP  AD + +++RLL                      A  +   L   +    ++ + L   D V +   ++L     D  +  +  A   T F +Y   +P FN ++N+ M + S +    + +    F+G+ +LVDVGGG G+    I+   P IK    DLPHV+ + P    ++ + GDMF
Sbjct:   15 EACMYAMQLASASILPMTLKNALELGLLEVLQAEAPAGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGIP-FNKAYGMTAF-EYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFEGVSTLVDVGGGIGATLHAITSHHPQIKGINFDLPHVISEAPPFPGVQHVGGDMF 252          
BLAST of CX078059 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 59/221 (26.70%), Postives = 98/221 (44.34%), Query Frame = 1
Query:  148 SLKCAVELDIPEVIHKHGRPITLPQLVSALEI---NPTKADGLFKLMRLLVHTGFFSTANVXXXXXXXXXXYALTLTSK-LFLKDKPYCLSPVVLTLTDPVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMF 798
            +L+ A+EL++ E+I + G    L       +I   NP+ A  L +++R+L  +   S +            Y L   S+ L   +    + P++L  +D   V   + +     +  +  ++  + G  F+ Y  K    N  +NQAM + S +A   V      F  L  LVDVGGG G+    I    P I+    +LPHV+   PD   ++ + GDMF
Sbjct:   54 ALRAAIELNVFEIISQAGPDAQLSPSDIVAKIPTKNPSAAISLDRILRMLGASSILSVSTTKSGRV-----YGLNEESRCLVASEDKVSVVPMLLFTSDKAVVESFYNIKDVVLEEGVIPFDRTH-GMDFFQYAGKEERVNKSFNQAMGAGSTIAFDEVFKVYKGFDNLKELVDVGGGIGTSLSNIVAKHPHIRGINFELPHVIGDAPDYPGVEHVPGDMF 268          
BLAST of CX078059 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.533e-12
Identity = 54/230 (23.48%), Postives = 100/230 (43.48%), Query Frame = 1
Query:  130 NYVSSTSLKCAVELDIPEVIHKHGRP---ITLPQLVSALEINPTKAD---GLFKLMRLLVHTGFFSTANVXXXXXXXXXXYALTLTSKLFLKDKPY-CLSPVVLTLTDPVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMF 798
            N V    L  A++L++ E+I K   P   ++  ++ S L  +   +D    L +++RLL      ++             Y L++  K  + D+    L+     L  P  +           D ++  ++  + G   +++M K+   N I+N++M          + +    F+G+ +LVDVGGG+G    +I   +P IK    DLP V+   P    ++ + GDMF
Sbjct:   34 NLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMF 262          
BLAST of CX078059 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 59/242 (24.38%), Postives = 103/242 (42.56%), Query Frame = 1
Query:   97 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKH---GRPITLPQLV----SALEINPTKADGLF-KLMRLLVHTGFFSTANVXXXXXXXXXXYALTLTSKLFLKDKPYCLSPVVLTLTDPVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMF 798
            EA  +  ++  + +   +LK A+EL + EV+ K    G+    P+ V     A   +P  A  +  +++RLL                      A  +   L   +    ++ + L   D V +   ++L     D  +  +  A   T F +Y   +  FN ++N+ M + S +    + D    F+G+ +LVDVGGG G+    I+   P I     DLPHV+ + P    ++ + GDMF
Sbjct:   15 EACMYAMQLASSSILPMTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQMEDRDGRYERRYSAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIP-FNKAYGMTAF-EYHGTDARFNRVFNEGMKNHSVIITKKLLDFYTGFEGVSTLVDVGGGVGATLHAITSRHPHISGVNFDLPHVISEAPPFPGVRHVGGDMF 254          
The following BLAST results are available for this feature:
BLAST of CX078059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
COMT1_SACOF3.870e-1325.00Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
SMT_COPJA7.299e-1226.70(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
CHOMT_MEDSA9.533e-1223.48Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
COMT1_MAIZE4.731e-1124.38Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F11-K22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078059 ID=CX078059; Name=CX078059; organism=Citrus sinensis; type=EST; length=799bp
CTCTCTTATCACTTTTCATTTTAACAAATTTCTGCATAACTATCGGTCAC
TGAAATTATGGATCCAATTCAAAATGAGGGAGCAAAAGAGATGTTTGAAG
CTCAAGCTCATCTGTTTAAAATTATATACAACTATGTGAGCTCAACTTCA
CTCAAGTGTGCAGTTGAGCTTGACATTCCGGAAGTAATTCACAAACACGG
ACGGCCCATCACTCTCCCTCAGTTAGTTTCGGCACTTGAGATTAATCCTA
CAAAAGCTGATGGCCTATTCAAGCTAATGAGGTTGTTGGTTCACACAGGC
TTCTTTTCAACAGCAAATGTTCAAAGCGCTCAGCAACAACAAGAAGAAGC
ATATGCTCTCACATTGACTTCCAAGCTGTTCCTCAAAGACAAGCCCTACT
GTTTATCACCAGTCGTTTTGACATTGACTGACCCAGTTTTTGTAAATCCA
TGCCATTTTTTGAGTCGGTGGTTCAGAGACAATGAGCTCTCAGCATATGA
AACTGCGAATGATGGAACGGTCTTTTGGGATTACATGGCAAAAAACCCTG
ATTTCAACAGCATCTACAATCAGGCCATGGCCAGTGATTCTCAACTGGCA
AACTTGATTGTTAAGGACTGCCAGCCAATTTTCCAGGGCTTAGGTTCGTT
AGTTGATGTAGGTGGTGGTACAGGATCCTTTGCCAGGATCATATCCGAGG
CATTTCCTGGCATAAAATGCACGGTACTTGATCTCCCACACGTTGTTCCC
AAAGTGCCAGACACCGACAACTTGAAATTCATAGCAGGCGACATGTTTC
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