DR908509

Overview
NameDR908509
Unique NameDR908509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP-GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA 335
            K Y  ++  N  A+A++ +  GY +VSGG+ NHL+L+DLR   ++G   E +L  A IT+NKN VP  DKS  V  GIRIG+PAMTTRG    E   I +FI   +    +A
Sbjct:  300 KAYAQQIKDNAAAMAAKFLAAGYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKVAEAEKIVEFIDRVISAANDA 411          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_AQUAE (Serine hydroxymethyltransferase OS=Aquifex aeolicus GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ 350
            K Y  +VV N R LA  L + G+K+V+GG+D+H+VLVDLR   I G   EK L+ A IT+NKN+VP D        GIRIG+ A+TTRG  E E   IA +I+E V   ++ +K +Q
Sbjct:  279 KEYAKQVVENARVLAEELKKYGFKIVTGGTDSHIVLVDLRNKNIIGKDAEKALEKAGITVNKNAVPFDPLPPTKTSGIRIGTAALTTRGMKEDEMRKIAGWINE-VLSNMDDEKTIQ 394          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_ACISJ (Serine hydroxymethyltransferase OS=Acidovorax sp. (strain JS42) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 464
            K YQ +V  N +  A  L++ G ++VSG +++H++LVDLR  GI G   E  L  A IT+NKN++P D +  +V  GIR+G+PA+TTRGF E+E    A+ + + ++                      +P+     N+  +R +V ALT++FP+
Sbjct:  282 KQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRLTANLVADVLD----------------------NPHDEA--NLEAVRAKVHALTSRFPV 412          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            K YQ +VV N +A+A  L+E GY +VSGG+ NHL L+ L    I G   +  L  A IT+NKNSVP D +S  V  GIRIG+PA+TTRGF E E   +A +I
Sbjct:  284 KAYQQQVVKNAQAMAEVLIERGYDVVSGGTKNHLFLLSLIKQDITGKDADAWLGAAHITVNKNSVPNDPRSPFVTSGIRIGTPAVTTRGFGEAEVRDLASWI 385          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 46/106 (43.40%), Postives = 71/106 (66.98%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 317
            K Y N+VV+N + LA  L + G++++SGG+D HL+L+D+   G+ G+  EK L  A IT+NKN++P D +  + P G+RIG+PA+TTRG  E E   +  +I E +
Sbjct:  284 KDYANQVVANAKVLAQSLADQGFRIISGGTDTHLMLIDVFAAGMLGSEAEKALGEAGITVNKNAIPFDTNPPMKPSGVRIGTPALTTRGMKEPEMRQVGIWIAESL 389          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA1_BURS3 (Serine hydroxymethyltransferase 1 OS=Burkholderia sp. (strain 383) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 311
            K Y + V++N +AL   L   G  LV+GG+DNHL+LVDLRP G+ GA VE+ L+ A IT NKN +P D +   V  GIR+G+PA TTRGF   EF  +   I E
Sbjct:  288 KTYIDNVLANAQALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAPVEQALERAGITCNKNGIPFDTEKPTVTSGIRLGTPAGTTRGFGVAEFREVGRLILE 391          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 53/104 (50.96%), Postives = 64/104 (61.54%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 311
            K Y  +VV N +ALA  L+E G  +VSGG+DNHL+LVDLR     G R E  L  A IT NKN +P D +   V  G+R+G+PA TTRGF E EF  I   I E
Sbjct:  288 KDYAAQVVKNAKALAETLIEGGLDVVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFKEAEFREIGKLIVE 391          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_THEEB (Serine hydroxymethyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 311
            K Y  +V+ N +ALA+ L     +LVSGG+DNHL+L+DLR + + G   ++++    IT NKN++P D  S  V  G+R+G+PA+TTRGF+E EF  +A+ I +
Sbjct:  283 KAYCGQVIRNAQALAAGLQARQLRLVSGGTDNHLMLIDLRSVNLTGKEADRLMGEIHITTNKNTIPFDPASPFVTSGLRLGTPALTTRGFTEVEFAEVAEIISD 386          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_PSYCK (Serine hydroxymethyltransferase OS=Psychrobacter cryohalolentis (strain K5) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 57/155 (36.77%), Postives = 89/155 (57.42%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 464
            K YQ +VV N +A+A  + + GY+++SGG++NHL+L+ L    + G   +K L  A IT+NKN+VP D KS  V  GIRIG+PA+TTRGF+E +   +A +I +           V  S+  + +              A++RG+VEA+  + P+
Sbjct:  283 KTYQQQVVKNAQAMAKVIQDRGYEIISGGTENHLMLISLVKQEMTGKEADKWLGDAHITVNKNAVPNDPKSPFVTSGIRIGTPAITTRGFNEAQAGDLAGWICD-----------VLDSRGDEAV-------------TAEVRGKVEAICKELPV 413          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_PROMM (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            +VY  +VV+N + LA R+ E G  +VSGG+DNHLVL+DLR +G+ G   + ++   +IT NKN+VP D +S  V  G+R+G+ A+TTRGF ++ F  +AD I
Sbjct:  289 QVYSCQVVANAQVLAGRIQERGIAVVSGGTDNHLVLLDLRSIGMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFDDEAFREVADVI 390          
The following BLAST results are available for this feature:
BLAST of DR908509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLTE2.302e-1944.64Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_AQUAE2.302e-1947.01Serine hydroxymethyltransferase OS=Aquifex aeolicu... [more]
GLYA_ACISJ2.302e-1934.84Serine hydroxymethyltransferase OS=Acidovorax sp. ... [more]
GLYA_ACIRA2.302e-1950.98Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA_ACIBL2.302e-1943.40Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA1_BURS32.302e-1950.00Serine hydroxymethyltransferase 1 OS=Burkholderia ... [more]
GLYA1_AGRT52.302e-1950.96Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA_THEEB3.007e-1944.23Serine hydroxymethyltransferase OS=Thermosynechoco... [more]
GLYA_PSYCK3.007e-1936.77Serine hydroxymethyltransferase OS=Psychrobacter c... [more]
GLYA_PROMM3.007e-1947.06Serine hydroxymethyltransferase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16637 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908509 ID=DR908509; Name=DR908509; organism=Citrus sinensis; type=EST; length=625bp
TTAAAGTTTACCAGAACAAGGTGGTCTCTAATTGCAGAGCGCTTGCAAGC
CGATTGGTTGAATTAGGTTACAAGCTGGTGTCAGGAGGGAGCGACAATCA
CCTGGTTCTTGTAGATCTAAGGCCGATGGGTATTGATGGGGCTCGGGTAG
AGAAAATTCTTGACATGGCCTCCATCACTCTCAACAAAAATTCAGTGCCT
GGTGACAAGAGTGCTCTAGTGCCGGGTGGTATTCGCATTGGCTCACCTGC
AATGACAACTAGAGGATTTTCTGAGAAAGAATTTGTTGCAATTGCTGACT
TTATACACGAGGGTGTAGAAATAACCCTGGAAGCTAAAAAGTTGGTTCAA
GGATCAAAGCTCCAAGACTTCATGAATTTTGTCACATCACCCAATTTCTC
GTTGATGAATAATGTCGCCGATCTTCGTGGTCGGGTTGAAGCTCTCACAA
CCCAGTTTCCCATCCCCGGAGTATGATTGTATAGTTGTTTTACAGGTTAA
AACCCGTTTGATGCTTTCTCATGGGGGAAAATGACAGGCACTATGTTTTT
GCTTGTGTGAACTGCAGGGGAAAATTAAATTATTATAATATAGGGGTTAA
ATTACTTATGGAAATGATGAATTAT
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