DR908509

Overview
NameDR908509
Unique NameDR908509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_PROVI (Serine hydroxymethyltransferase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glyA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:    9 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP-GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            Y  +V SN  A++ R + LGY +VSGG+ NHL+L+DLR   I G  VE  L  A IT+NKN VP  DKS  V  GIRIG+ AMTTRG +E +   IA+ I
Sbjct:  302 YAMQVRSNAAAMSERFLSLGYNIVSGGTKNHLMLLDLRNKDITGKVVENTLHEAGITVNKNMVPFDDKSPFVTSGIRIGTAAMTTRGMNEDDSRLIAELI 401          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_JANMA (Serine hydroxymethyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=glyA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 320
            K YQ +VV N  ALA  L+  G ++VS  +++H++LVDLR   I G   E +L  A IT NKN++P D +   V  GIR+GSPAMTTRGF E E   + + I + +E
Sbjct:  282 KTYQQQVVKNADALAKALIARGLRIVSNRTESHVMLVDLRAKKITGKDAENLLGSAHITCNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEAEATKVGNLIADVLE 388          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_HALWD (Serine hydroxymethyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=glyA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGID--GARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 320
            + Y  + V N   LA+ L + G  +VSGG+DNHLVLVDLRP   +  G  VE  L+ A I +N N+VPG+ +SA  P GIR+G+PA+TTRGF+E     + + + E ++
Sbjct:  281 EAYAEQTVKNAEELANTLTDAGLSVVSGGTDNHLVLVDLRPSHPETTGKEVEAALESAGIIMNANTVPGETRSAFNPSGIRVGTPALTTRGFTESTVREVGELMIELID 389          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_AYWBP (Serine hydroxymethyltransferase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=glyA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGID--GARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 317
            K YQ +V+ N    A    + GY++VSG +DNHL L+D++    +  GA++  +L+  +I +NKN++P D +   V  GIRIG+PAMTT GF E +FVA+AD + + +
Sbjct:  297 KEYQKQVIKNANTFAKAFQQKGYRIVSGSTDNHLFLIDVKHKNTEFTGAKIANMLEKINIVVNKNTIPFDQEKPFVTSGIRIGTPAMTTVGFRENDFVAVADLMDKAI 404          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_ALISL (Serine hydroxymethyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=glyA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI-----HEGVEITLEAKK 341
            K YQ +VV+N +A+ +  +  GY +VSG ++NHL LVDL    I G   +  L  A+IT+NKNSVP D +S  V  GIR+GSP++T RGFSE++   +A ++     + G E  +EA K
Sbjct:  284 KEYQVRVVANAKAMVAEFLARGYNIVSGSTENHLFLVDLIDKDITGKEADAALGSANITVNKNSVPNDPRSPFVTSGIRVGSPSITRRGFSEEDAKNLAGWMCDILDNMGDESVIEATK 402          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA2_VIBPA (Serine hydroxymethyltransferase 2 OS=Vibrio parahaemolyticus GN=glyA2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            K Y + V++N + LA  L   G  +V+GG+D HL+LVDLRP G+ G + E+ L+ A IT NKN +P D +  ++  GIR+G+PA T+RGF  +EF  I ++I
Sbjct:  294 KTYIDSVINNAKVLAEVLQTRGCDIVTGGTDTHLMLVDLRPKGLKGNKAEEALERAGITCNKNGIPFDTEKPMITSGIRLGTPAGTSRGFGAEEFKLIGNWI 395          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEAE (Serine hydroxymethyltransferase 2 OS=Pseudomonas aeruginosa GN=glyA2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            K YQ +V+ N +A+A   +  GY +VSGG+DNHL+L+ L   G+ G   +  L  A IT+NKN+VP D +S  V  GIRIG+PA+TTRGF E E   +A +I
Sbjct:  285 KDYQAQVIRNAKAMAEVFIGRGYDVVSGGTDNHLMLISLVKQGLTGKAADAALGAAHITVNKNAVPNDPQSPFVTSGIRIGTPAVTTRGFREGECRELAGWI 386          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA2_HAHCH (Serine hydroxymethyltransferase 2 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 52/122 (42.62%), Postives = 76/122 (62.30%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQ 365
            K YQ +VV N R +A   ++ GY +VSGG+D+HL LVDL    I G   +  L  A+IT+NKN+VP D +S  V  G+RIG+PA+T RG  E E   + D+I + ++  +E ++ +Q  K Q
Sbjct:  285 KQYQAQVVKNARVMADTFIQRGYDIVSGGTDDHLFLVDLIKKDITGKDADAALGRANITVNKNAVPNDPRSPFVTSGLRIGTPAITRRGMGEVEAKELTDWICDVLD-DIENEETIQRVKQQ 405          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA1_PSESM (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. tomato GN=glyA1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.749e-19
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            K YQ +V+ N +A+A   +  G+ +VSGG+DNHL LV L   G+ G   +  L  A IT+NKNSVP D +S  V  G+RIG+PA+TTRGF   + + +A +I
Sbjct:  285 KTYQQQVIDNAQAMAQVFITRGFDVVSGGTDNHLFLVSLIRQGLTGKEADAALGRAHITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCIELAGWI 386          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_VIBFM (Serine hydroxymethyltransferase OS=Vibrio fischeri (strain MJ11) GN=glyA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI-----HEGVEITLEAKK 341
            K YQ +VV+N +A+ +  +  GY +VSG ++NHL LVDL    I G   +  L  A+IT+NKNSVP D +S  V  GIRIGSP++T RGF+E++   +A ++     + G E  +EA K
Sbjct:  284 KEYQARVVANAKAMVAEFLARGYNIVSGSTENHLFLVDLIDKDITGKEADAALGSANITVNKNSVPNDPRSPFVTSGIRIGSPSITRRGFTEEDAKNLAGWMCDILDNMGDESVIEATK 402          
The following BLAST results are available for this feature:
BLAST of DR908509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROVI8.749e-1952.00Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_JANMA8.749e-1945.79Serine hydroxymethyltransferase OS=Janthinobacteri... [more]
GLYA_HALWD8.749e-1944.95Serine hydroxymethyltransferase OS=Haloquadratum w... [more]
GLYA_AYWBP8.749e-1941.67Serine hydroxymethyltransferase OS=Aster yellows w... [more]
GLYA_ALISL8.749e-1943.70Serine hydroxymethyltransferase OS=Aliivibrio salm... [more]
GLYA2_VIBPA8.749e-1945.10Serine hydroxymethyltransferase 2 OS=Vibrio paraha... [more]
GLYA2_PSEAE8.749e-1948.04Serine hydroxymethyltransferase 2 OS=Pseudomonas a... [more]
GLYA2_HAHCH8.749e-1942.62Serine hydroxymethyltransferase 2 OS=Hahella cheju... [more]
GLYA1_PSESM8.749e-1946.08Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA_VIBFM1.143e-1843.70Serine hydroxymethyltransferase OS=Vibrio fischeri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16637 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908509 ID=DR908509; Name=DR908509; organism=Citrus sinensis; type=EST; length=625bp
TTAAAGTTTACCAGAACAAGGTGGTCTCTAATTGCAGAGCGCTTGCAAGC
CGATTGGTTGAATTAGGTTACAAGCTGGTGTCAGGAGGGAGCGACAATCA
CCTGGTTCTTGTAGATCTAAGGCCGATGGGTATTGATGGGGCTCGGGTAG
AGAAAATTCTTGACATGGCCTCCATCACTCTCAACAAAAATTCAGTGCCT
GGTGACAAGAGTGCTCTAGTGCCGGGTGGTATTCGCATTGGCTCACCTGC
AATGACAACTAGAGGATTTTCTGAGAAAGAATTTGTTGCAATTGCTGACT
TTATACACGAGGGTGTAGAAATAACCCTGGAAGCTAAAAAGTTGGTTCAA
GGATCAAAGCTCCAAGACTTCATGAATTTTGTCACATCACCCAATTTCTC
GTTGATGAATAATGTCGCCGATCTTCGTGGTCGGGTTGAAGCTCTCACAA
CCCAGTTTCCCATCCCCGGAGTATGATTGTATAGTTGTTTTACAGGTTAA
AACCCGTTTGATGCTTTCTCATGGGGGAAAATGACAGGCACTATGTTTTT
GCTTGTGTGAACTGCAGGGGAAAATTAAATTATTATAATATAGGGGTTAA
ATTACTTATGGAAATGATGAATTAT
back to top