DR908287

Overview
NameDR908287
Unique NameDR908287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908287 vs. ExPASy Swiss-Prot
Match: CSLC9_ORYSJ (Probable xyloglucan glycosyltransferase 9 OS=Oryza sativa subsp. japonica GN=CSLC9 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 80/199 (40.20%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   58 WELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWQKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNEKEVYKISIGAACGLSWPSDRLVIQVLDDSTDPAIKQMVEQECQRWAAKGINIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDYLRRAIPYLVQTLTLPLVQARWRF 654
            W   +A  + P ++     C+ + L+   +R+   +    + L   KP  +    P  +D +  ++ +P+VL+QIPM NEKEVY+ SI A C L WP    ++QVLDDS DP  + ++ +E  +W   G  I Y+ R  R GYKAG LK  +  SYVK  E+VAIFDADF+P PD+L+R +P+      L LVQARW F
Sbjct:   72 WLRFRATYVAPFIQFLTDACVVLFLIQSADRLIQCLGCFYIHLKRIKPNPKSPALPDAEDPD--AAYYPMVLVQIPMCNEKEVYQQSIAAVCNLDWPRSNFLVQVLDDSDDPTTQTLIREEVLKWQQNGARIVYRHRVLRDGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPNPDFLKRTVPHFKDNDELGLVQARWSF 268          
BLAST of DR908287 vs. ExPASy Swiss-Prot
Match: CSLC7_ORYSJ (Probable xyloglucan glycosyltransferase 7 OS=Oryza sativa subsp. japonica GN=CSLC7 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.792e-38
Identity = 80/201 (39.80%), Postives = 121/201 (60.20%), Query Frame = 1
Query:   58 WELLKAPLIVPLLKLGVYICLAMSLMLFMERVYM--GIVIILVKLFWQKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNEKEVYKISIGAACGLSWPSDRLVIQVLDDSTDPAIKQMVEQECQRWAAKGINIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDYLRRAIPYLVQTLTLPLVQARWRF 654
            W  L+   + P L+     C+A+ ++  ++R+ +  G   I  K     P+     +P   DVE G+ ++P+VL+Q+PM NE+EVY+ SIGA C L WP    ++QVLDDS D     ++++E ++W  +G+ I Y+ R  R GYKAG LK  +  SYVK  E+V IFDADF+P+ D+L+R +P+      + LVQARW F
Sbjct:  163 WMRLRLDYLAPPLQFLTNACVALFMVQSIDRLVLCLGCFWIRFKGIKPVPQAAAAGKP---DVEAGAGDYPMVLVQMPMCNEREVYQQSIGAVCNLDWPKSNFLVQVLDDSDDATTSALIKEEVEKWQREGVRIIYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVVIFDADFQPQADFLKRTVPHFKGKDDVGLVQARWSF 360          
BLAST of DR908287 vs. ExPASy Swiss-Prot
Match: BCSA_SALTI (Cellulose synthase catalytic subunit [UDP-forming] OS=Salmonella typhi GN=bcsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 53/184 (28.80%), Postives = 85/184 (46.20%), Query Frame = 1
Query:  112 ICLAMSLMLFMERVYMGIVIIL--VKLFWQKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNEK-EVYKISIGAACGLSWPSDRLVIQVLDDSTDPAIKQMVEQECQRWAAKGINIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDYLRRAIPYLVQTLTLPLVQARWRF 654
            + L   L+L     Y  IV++L   ++ W       N QP+    E+  S +P V I +P +NE   V K +I A+ G+ WP D+L I +LDD    + +Q          A+ + + Y  R      KAG +   LK +     E+VAIFD D  P   +L+  + + ++   L ++Q    F
Sbjct:  228 VSLVCGLILLFAETYAWIVLVLGYFQVVWP-----LNRQPVPLPKEM--SQWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRESFRQF---------ARHVGVHYIARATHEHAKAGNINNALKHA---KGEFVAIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHF 392          
BLAST of DR908287 vs. ExPASy Swiss-Prot
Match: BCSA_SALTY (Cellulose synthase catalytic subunit [UDP-forming] OS=Salmonella typhimurium GN=bcsA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 1
Query:  112 ICLAMSLMLFMERVYMGIVIIL--VKLFWQKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNEK-EVYKISIGAACGLSWPSDRLVIQVLDDSTDPAIKQMVEQECQRWAAKGINIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDYLRRAIPYLVQTLTLPLVQARWRF 654
            + L   L+L     Y  IV++L   ++ W       N QP+    E+  S +P V I +P +NE   V K +I A+ G+ WP D+L I +LDD           +E  R  A+ + + Y  R      KAG +   LK +     E+VAIFD D  P   +L+  + + ++   L ++Q    F
Sbjct:  228 VSLVCGLILLFAETYAWIVLVLGYFQVVWP-----LNRQPVPLPKEM--SQWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDG---------GRESFRHFARHVGVHYIARTTHEHAKAGNINNALKHA---KGEFVAIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHF 392          
The following BLAST results are available for this feature:
BLAST of DR908287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CSLC9_ORYSJ7.498e-3840.20Probable xyloglucan glycosyltransferase 9 OS=Oryza... [more]
CSLC7_ORYSJ9.792e-3839.80Probable xyloglucan glycosyltransferase 7 OS=Oryza... [more]
BCSA_SALTI2.685e-1128.80Cellulose synthase catalytic subunit [UDP-forming]... [more]
BCSA_SALTY4.580e-1129.35Cellulose synthase catalytic subunit [UDP-forming]... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16415 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-08_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908287 ID=DR908287; Name=DR908287; organism=Citrus sinensis; type=EST; length=672bp
ATACCAGAGTCATTCCAAGTGTCAAGAGAGGACATTGCAGGACAAATTGG
TTTGATTTGGGAACTACTCAAAGCCCCATTGATAGTCCCTTTGCTTAAAC
TCGGGGTCTACATTTGCTTGGCCATGTCACTCATGCTCTTCATGGAAAGG
GTTTACATGGGCATTGTTATAATCCTTGTTAAGCTGTTTTGGCAAAAACC
TGAGAAGCGTTACAATTGGCAGCCTATTGAAGACGATGTCGAATTGGGCA
GCTCTAATTTCCCCGTTGTTCTTATTCAAATCCCAATGTTCAATGAAAAA
GAGGTTTACAAAATCTCCATTGGAGCAGCTTGCGGACTCTCTTGGCCGTC
CGATCGTCTCGTGATCCAAGTCCTTGACGATTCAACTGACCCTGCCATCA
AGCAAATGGTGGAGCAAGAGTGCCAAAGATGGGCGGCCAAAGGCATTAAC
ATAAGGTACCAAATCAGAGAGAATCGCACGGGATACAAAGCTGGTGCTCT
CAAAGAAGGGCTCAAAAGAAGCTATGTTAAACATTGTGAATACGTGGCCA
TTTTCGACGCCGATTTCCGGCCGGAGCCCGATTATCTCCGACGTGCCATT
CCTTACTTAGTCCAAACTCTGACATTGCCCCTTGTTCAAGCTCGCTGGAG
ATTCGGTAAGCTAAATTTAATT
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