DR406174

Overview
NameDR406174
Unique NameDR406174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK4_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 73/229 (31.88%), Postives = 121/229 (52.84%), Query Frame = 1
Query:   43 AAMAAKKLSETFSKTLI-EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            A    +  S   S +L+  EV  +     + +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   +F   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V ++A E A+ +C + Y ++P+ N+
Sbjct:    4 ARFVMRSASSLSSASLVPREVELFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPDRLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKALSEFVDTLVKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVQDAFECAKMLCDQYYLTSPELNL 227          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK4_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.224e-23
Identity = 67/198 (33.84%), Postives = 108/198 (54.55%), Query Frame = 1
Query:  133 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V  +A E A+ +C + Y ++P+  +
Sbjct:   35 LSMKQLLDFGSENACERTSFS--FLRQELPVRLANILKEIDILPEHLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKVLSDFVDTLVKVRNRHHNVVPTMAQGILEYKDNCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVEDAFECAKMLCDQYYLTSPELKL 227          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.224e-23
Identity = 70/200 (35.00%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  133 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L     +P+   H IG I+     V+V ++  E+AR +C   Y ++P+  +
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPELEL 250          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK1_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.224e-23
Identity = 70/200 (35.00%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  133 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L     +P+   H IG I+     V+V ++  E+AR +C   Y ++P+  +
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPELEL 250          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK1_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.387e-22
Identity = 70/202 (34.65%), Postives = 110/202 (54.46%), Query Frame = 1
Query:  133 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH------NPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   DFT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+ QH  L       +P+   H IG I+   + ++V ++  E+AR +C   Y ++P+  +
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKH-IGSINPNCNVLEVIKDGYENARRLCDLYYINSPELEL 252          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK4_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 69/210 (32.86%), Postives = 112/210 (53.33%), Query Frame = 1
Query:   97 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            EV  +     + +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V ++A E +R +C + Y S+P+  +
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKL 227          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK4_SPETR ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Spermophilus tridecemlineatus GN=PDK4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.882e-22
Identity = 65/198 (32.83%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  133 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            +S++ +++FGS    +    S  FL +ELP+R+A    E++ LP  L+   +V  V+ WY+ S  +L  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID K   V V ++A E ++ +C + Y ++P+  +
Sbjct:   35 LSMKQLLDFGSDNACERTSFS--FLRQELPVRLANILKEIDVLPDRLTNTSSVQLVKSWYIQSLMELVEFHE-KSPEDQKNLSDFVDTLIKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QSLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPKCDVVAVIQDAFESSKMLCDQYYLTSPELKL 227          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK4_RHIFE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.882e-22
Identity = 67/210 (31.90%), Postives = 113/210 (53.81%), Query Frame = 1
Query:   97 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            EV  +     + +S++ +++FGS+   +    S+ FL +ELP+R+A    E++ LP  L    +V  V+ WY+ S  +L  F + RS  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID   +   V ++A E +R +C + Y ++P+  +
Sbjct:   23 EVEHFSRYSPSPLSMKQLLDFGSENACERT--SSAFLRQELPVRLANILKEIDILPDRLVNTSSVQLVKSWYIQSLMELVEFHE-RSPDDQKVLSDFVDTLITVRNRHHNVVPTMAQGIIEYKDSCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCNVAAVVQDAFECSRMLCDQYYLTSPELKL 227          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDK_ASCSU ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.608e-21
Identity = 74/227 (32.60%), Postives = 113/227 (49.78%), Query Frame = 1
Query:   58 KKLSETFSKTLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSF------PDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            ++L   F+  +  ++  +   + + ++++  ++FG   T K+  +   FL  EL +R+A    E+  LP  L + P+   V +WY +SF DL  F      PDI S      F   ++ I  RH+ VV  MA GL +L++     I  E    I  FLDRFY++RI IRML  QH+ +     P  P H IG ID       V  +A E+AR +C R Y +AP   +
Sbjct:    5 RRLLGPFTSAIARKLEHYSQFQPSSLTIQQYLDFGQTGTMKSSFL---FLKNELLVRLANIMQEISLLPPTLLKMPSRRLVSNWYCESFEDLLQFEHAQVEPDIMS-----KFNDQLQTILKRHSRVVETMAEGLIELRESEGVDIASE--RGIQYFLDRFYINRISIRMLQNQHLVVFGVVLPESPRH-IGCIDPGCDVESVVHDAYENARFLCERYYLTAPGMKL 220          
BLAST of DR406174 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.099e-19
Identity = 71/223 (31.84%), Postives = 112/223 (50.22%), Query Frame = 1
Query:   55 AKKLSETFSKTLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI 711
            ++KL   F  +L +++  +   + + ++++  ++FG   T  N   S  FL  EL +R+A    E   LP  L + P+   V +WY +SF DL  F    S+ ++   F   +  +  RH +VV  MA GL +L++     I  E    I  FLDRFY++RI IRML  QH+ +     P  P H +G ID       V  +A E+AR +C R Y ++P   +
Sbjct:    4 SRKLLGPFVGSLAKKLDYYSQFQPSSLTIQQYLDFGRIGTSAN---SYTFLKNELLVRLANIMQEFTLLPPKLLQMPSSKMVSNWYAESFEDLLLFEASDSSPEQVARFNDQLTVVLKRHAHVVETMAEGLIELRESDGVDIASE--KGIQYFLDRFYINRISIRMLQNQHLVVFGNVLPESPRH-VGCIDPACDVESVVYDAFENARFLCDRYYLTSPSMKL 220          
The following BLAST results are available for this feature:
BLAST of DR406174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK4_MOUSE2.794e-2331.88[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RAT6.224e-2333.84[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_RAT6.224e-2335.00[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_MOUSE6.224e-2335.00[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_HUMAN1.387e-2234.65[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_HUMAN3.089e-2232.86[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_SPETR6.882e-2232.83[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RHIFE6.882e-2231.90[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK_ASCSU7.608e-2132.60[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDHK2_CAEEL1.099e-1931.84Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248P14 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248P14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406174 ID=DR406174; Name=DR406174; organism=Citrus sinensis; type=EST; length=742bp
GGGGAGGAATTGGATTTTTTTGTGAGAAAGCAGAAGCCAGAAGCAGCAAT
GGCTGCTAAGAAATTGTCGGAGACGTTTTCGAAGACCTTGATCGAGGAGG
TTGGGCGATGGGGATGCATGAAACAGACAGGTGTGAGCTTGAGGTACATG
ATGGAGTTTGGCTCAAAACCTACAGACAAGAATTTGCTAATTTCTGCTCA
GTTTCTTCACAAAGAGCTTCCAATTAGAATCGCCAGACGAGCAATTGAGC
TCGAGACACTTCCTTACGGTTTATCCGAGAAGCCTGCCGTTTTGAAGGTT
CGAGACTGGTATTTGGACTCATTTCGTGATTTGAGGTCGTTTCCTGACAT
CAGAAGTACGAGTGATGAGAGGGATTTTACGCAAATGATTAAGGCGATTA
AGGTGAGGCATAATAATGTGGTGCCCATGATGGCGTTGGGGCTGCAACAA
TTGAAGAAAGAGATGGATCCCAAGATTGTTTACGAGGATCTTGATGAGAT
TCATCAGTTTCTGGATCGGTTTTACATGTCTAGGATCGGAATTCGTATGC
TTATTGGGCAGCATGTAGAATTGCACAATCCCAACCCTCCACCTCATTGT
ATTGGCTACATAGACACAAAAATGTCTCCAGTGCAGGTTGCTAGGAATGC
TAGTGAGCATGCACGTTGTGTTTGTCTGCGGGAGTATGGCAGTGCACCCG
ATTTTAATATCTACGGTGATCCCAGTTTTACATTCCCTTACG
back to top