DR406106

Overview
NameDR406106
Unique NameDR406106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6306 contig Csv1_Contig6306:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.868e-45
Identity = 100/178 (56.18%), Postives = 126/178 (70.79%), Query Frame = 3
Query:  159 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSD 671
            MA+ +LVTGGAGYIGSHTVL+LL  GY  VV+DN  NA         ++ +V+EL G    ++ F ++D+ D+ AL+ LF K  F AVIHFAGL+AVGESVQKPL Y+  NL GTI LLE+M AHG KNLVFSSSATVYG P+ +P  E  P     NPYG++K FIEE+ RD+ ++D
Sbjct:    1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR---SVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQAD 175          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.968e-42
Identity = 92/172 (53.49%), Postives = 118/172 (68.60%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDS 674
            ILVTGGAGYIGSHTV++L+  GYK ++VDNL N+   AVA+V+ +      ++ F KLDLRDK  L  +F   K   VIHFA L+AVGES++ PL Y+DNN+ GTITLL VM  H  K +VFSSSATVYG    +  ++P  E  P +  NPYG+TK  IE I +D+H SD+
Sbjct:    8 ILVTGGAGYIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEFIVRK---SIKFFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDNNICGTITLLNVMREHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENIIKDLHTSDN 176          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.636e-42
Identity = 92/173 (53.18%), Postives = 118/173 (68.21%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSD 671
            K  LVTGGAGYIGSHTV++L   GYK +VVDNL N+S  +VA+++ L G +   + F K+DL +   L  LF   K  +V+HFAGL+AVGES Q PL Y+ NN++GTI LLE M +H  K LVFSSSATVYG    +  ++P  E  P    NPYG+TKL IE++ RD+H SD
Sbjct:    5 KYCLVTGGAGYIGSHTVVELCEAGYKCIVVDNLSNSSYESVARMELLTGQE---IKFAKIDLCELEPLNKLFDDYKIDSVLHFAGLKAVGESTQIPLTYYFNNIVGTINLLECMKSHDVKKLVFSSSATVYGDATRFENMIPIPETCPTGPTNPYGKTKLTIEDMMRDLHFSD 174          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.128e-41
Identity = 88/179 (49.16%), Postives = 123/179 (68.72%), Query Frame = 3
Query:  153 DSMAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 677
            +S +K +LVTGGAGYIGSHTV++L+  GY  VV DNL N++  +VA+++ L  +   ++ F+++DL D+  LE +F + K  +VIHFAGL+AVGES Q PL Y+ NN++GT+ LLE+M  +     VFSSSATVYG    +P ++P  EE PL   NPYG TK  IE I  D++ SD +
Sbjct:    8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH---HIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKK 183          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.597e-41
Identity = 96/180 (53.33%), Postives = 124/180 (68.89%), Query Frame = 3
Query:  159 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLE--AMNPYGRTKLFIEEICRDVHRSDS 674
            M + +LVTGGAGYIGSHTVL+LL  GY  VV+DN  N+         ++ +V+EL G    ++ F ++D+ D+AAL+ LF K  F AVIHFAGL+AVGESVQKPL Y+  NL GTI LLE+M A G K+LVFSSSATVYG P  VP +   P       PYG++K FIEE+ +D+ R+D+
Sbjct:    1 MEEKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNSIRGEDSMPESLRRVQELTGR---SVEFEEMDILDQAALQHLFKKHNFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAMGVKSLVFSSSATVYGKP--VPASGRGPPHRGCTKPYGKSKFFIEEMIQDLCRADT 175          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: YGRE_SCHPO (Uncharacterized protein C365.14c OS=Schizosaccharomyces pombe GN=SPBC365.14c PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.548e-41
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPK----VVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            +LVTGGAGYIGSHT + LL  GY  V+VDNL N+   AV ++++L G +   + FH++DL D+ AL+ +FA     AVIHFAGL+AVGESVQ PL Y+ NN+ GTI L+E M  +  ++ VFSSSATVYG P      +P  E  P E  +PYGRTKLFIE I  D
Sbjct:    9 VLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSRVEAVHRIEKLTGKK---VIFHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLIECMKKYNVRDFVFSSSATVYGDPTRPGGTIPIPESCPREGTSPYGRTKLFIENIIED 171          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.189e-40
Identity = 84/170 (49.41%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSE 677
            +LVTGG+GYIGSHT +QL+  GYK V++DNL N+    +A++  L G   +    +  D+RD+  L+++FA     AVIHFAGL+AVGESV +PL Y++NN+ GT+ LLE M A   KNL+FSSSATVYG    +P  E FP     +PYGR+KL +E+I +DV  +D +
Sbjct:    3 VLVTGGSGYIGSHTCVQLIEAGYKPVILDNLCNSKSSVLARIHSLTGYTPE---LYAGDIRDRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTLVLLEAMRAAQVKNLIFSSSATVYGDQPQIPYVESFPTGSPSSPYGRSKLMVEQILQDVQLADPQ 169          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.379e-39
Identity = 84/168 (50.00%), Postives = 120/168 (71.43%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSD 671
            ILVTGGAGYIGSHTV++LL  G + VV+DNL N+S  ++ +VK++ G +     F++ D+ D+A L+ +FA+ +  +VIHFAGL+AVGESVQKP  Y+ NN+ GT+ L++ M   G  N VFSSSATVYG PK++P TE+  +    NPYG +K  +E+I RD  +++
Sbjct:    3 ILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLERVKQITGKEAK---FYEGDILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNFVFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQILRDTAKAE 167          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.801e-39
Identity = 82/170 (48.24%), Postives = 120/170 (70.59%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSD 671
            KNILVTGG G+IGSHTV+ LL  G++ V++DNL N+S   + ++K + G +   + F++ D+RD+  L  +FA+ +  +VIHFAGL+AVGESV +P+ Y+DNN+ G++ L E MA  G  ++VFSSSATVYG P  VP TE+ PL +  +PYG +K  +E I  D+ ++D
Sbjct:    2 KNILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRLKTITGQE---IPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPLGDTTSPYGTSKSMVERILTDIQKAD 168          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38
Identity = 82/164 (50.00%), Postives = 118/164 (71.95%), Query Frame = 3
Query:  168 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            +IL+TGGAGYIGSHTVL LL  G   VV+DNL N+S  ++A+V ++ G + +   F+  D+ D++ L+ +F+  K  +VIHFAGL++VGESV+KP+ Y+ NN++G+ITLLE M     K L+FSSSATVYG P+ VP TE+  +    NPYG +K+ +E+I +D
Sbjct:    2 SILITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICGRKPN---FYHGDILDRSCLKLIFSSHKIDSVIHFAGLKSVGESVEKPIEYYQNNVVGSITLLEEMCLANVKKLIFSSSATVYGEPEFVPLTEKARIGGTTNPYGTSKVMVEQILKD 162          
The following BLAST results are available for this feature:
BLAST of DR406106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GALE_HUMAN2.868e-4556.18UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]
GAL10_SCHPO2.968e-4253.49Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GAL10_KLULA8.636e-4253.18Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]
GAL10_YEAST1.128e-4149.16Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]
GALE_RAT5.597e-4153.33UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
YGRE_SCHPO9.548e-4153.61Uncharacterized protein C365.14c OS=Schizosaccharo... [more]
GALE_YERPE6.189e-4049.41UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
GALE_HAEIN1.379e-3950.00UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]
GALE_NEIMA1.801e-3948.24UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_YEREN1.524e-3850.00UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L22 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406106 ID=DR406106; Name=DR406106; organism=Citrus sinensis; type=EST; length=678bp
GGGGGTCAGTTTCATTTTTTTCTTTTCCTTTAAATTTCTCTGAGCGAGGC
CAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAAATT
TTCGTGTACTTTGTGCCCTTTTTTTTGGTTCTTCTGATTGGTCTCTCCGT
TAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACATT
GGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTCGT
CGTCGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAAAG
AACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATCTC
CGGGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGGTGC
TGTCATCCATTTTGCTGGACTGGAAGCAGTTGGTGAAAGTGTGCAGAAAC
CATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGGAA
GTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCTAC
TGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTTAG
AGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTTGC
CGTGATGTCCACCGCTCAGACTCTGAAA
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