DR406106

Overview
NameDR406106
Unique NameDR406106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6306 contig Csv1_Contig6306:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.435e-38
Identity = 86/171 (50.29%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSD 671
            ILVTGGAGYIGSHTV++L+  GY  VVVDNL N+S   + +++ L   Q   + F K+DL D  AL+ +F      AV+HFA L+AVGES + PL Y+ NN+ G I+LL+VM  +  KN+VFSSSATVYG    +  ++P  E  P    NPYG TK+ IE I RDV+ +D
Sbjct:    4 ILVTGGAGYIGSHTVVELVNNGYNVVVVDNLVNSSYDVIVRIEVLTRKQ---IPFFKIDLNDHDALDQVFKLYPIQAVLHFAALKAVGESTKFPLNYYSNNVGGAISLLKVMEENNVKNIVFSSSATVYGDATRFENMIPIPEHCPTGPTNPYGETKITIENIIRDVYAND 171          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.792e-38
Identity = 80/170 (47.06%), Postives = 118/170 (69.41%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSD 671
            K ILVTGG G+IGSHTV+ LL  G++ V++DNL N+S   + ++K + G +   + F++ D+RD+  L  +FA+ +  +VIHFAGL+AVGESV +P+ Y+DNN+ G++ L E MA  G  ++VFSSSATVYG P  VP TE+ P  +  +PYG +K  +E I  D+ ++D
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRLKTITGQE---IPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERILTDIQKAD 168          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_NEIMC (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 80/170 (47.06%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEF-PLEAMNPYGRTKLFIEEICRDVHRSD 671
            K ILVTGG G+IGSHTV+ LL  G++ V++DNL N+S   + ++K + G +   + F++ D+RD+  L  +FA+ +  +VIHFAGL+AVGESV +P+ Y+DNN+ G++ L E MA  G   +VFSSSATVYG P  VP TE+  P +  +PYG +K  +E I  D+ ++D
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRLKTITGQE---IPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFKIVFSSSATVYGDPGKVPYTEDMQPGDTTSPYGTSKSMVERILSDIQKAD 168          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.290e-37
Identity = 84/171 (49.12%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  168 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSE 677
            +ILVTGGAGYIGSHTVL LL  G   V++DNL NAS  ++ +V++L G      TF + DL D++ L ++F+  +  AVIHFAGL+AVG S +KPL Y+ NN+ GT+ LLE M + G    +FSSSATVYG    VP  E  P+    +PYG +KL +E+I RD  +++ E
Sbjct:    2 SILVTGGAGYIGSHTVLSLLQRGDDVVILDNLSNASRESINRVEKLTGKTA---TFFEGDLLDRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAGVNQFIFSSSATVYGADAPVPYVETTPIGGTTSPYGTSKLMVEQILRDYAKANPE 169          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_PASMU (UDP-glucose 4-epimerase OS=Pasteurella multocida GN=galE PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.875e-37
Identity = 81/170 (47.65%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSE 677
            ILVTGGAGYIGSHTV++LL      VV+DNL N+S  ++ +V ++ G Q   + F++ D+ D A L+ +FA+ +  +VIHFAGL+AVGESVQKP  Y+ NN+ G++ L++ M   G  N VFSSSATVYG P+++P TE   +    NPYG +K  +E+I +D+ ++  E
Sbjct:    3 ILVTGGAGYIGSHTVVELLNANKDVVVLDNLCNSSPKSLERVAQITGKQ---VKFYQGDILDTALLQKIFAENQIQSVIHFAGLKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAGVWNFVFSSSATVYGDPEIIPITESCKVGGTTNPYGTSKFMVEQILKDIAKATPE 169          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.875e-37
Identity = 83/174 (47.70%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEI------AVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSD 671
            +LVTGGAGYIGSHTVL++L  GY  + VDNL NA         A+++V+E+ G +   + F+++D+ D+  + ++F + K   V HFA L+AVGES + PL Y+ NN+ GT  LLE MA +     V+SSSATVYG PK +P TEE P     +PYG+TK F EEI +D+ +SD
Sbjct:    6 VLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEALSRVQEITGKK---VNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCRIPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHPTGNCTSPYGKTKYFTEEILKDLCKSD 176          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 78/170 (45.88%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSE 677
            +LVTGG+GYIGSHT +QLL  G+  V++DNL N+    +  ++ L G    + TF + D+R++A +  +        VIHFAGL+AVGESV KPL Y+DNN+ GT+ L+  M A   KNL+FSSSATVYG    +P  E FP     +PYG++KL +E+I  D+ ++  E
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGK---HPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPE 169          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.060e-35
Identity = 76/170 (44.71%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSE 677
            +LVTGG+GYIGSHT +QLL  G+  +++DNL N+    +  ++ L G    + TF + D+R++A +  +        VIHFAGL+AVGESVQKPL Y+DNN+ GT+ L+  M A   KN +FSSSATVYG    +P  E FP     +PYG++KL +E+I  D+ ++  +
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK---HPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPD 169          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 77/170 (45.29%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSE 677
            +LVTGG+GYIGSHT +QLL  G+  V++DNL N+    +  ++ L G    + TF + D+R++A +  +        VIHFAGL+AVGESV +PL Y+DNN+ GT+ L+  M A   KNL+FSSSATVYG    +P  E FP     +PYG++KL +E+I  D+ ++  E
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGK---HPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPE 169          
BLAST of DR406106 vs. ExPASy Swiss-Prot
Match: GALE_NEIGO (UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 73/168 (43.45%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEF-PLEAMNPYGRTKLFIEEICRDVHRSD 671
            +L+TGG G+IGSHT + L+  GY  V++DNL N+S   + +++++ G    N+ F++ D+RD   L  +F++ +  +VIHFAGL+AVGESV +P  Y+ NN+ G++ L E MA  G   +VFSSSATVYG  + VP TE+  P +  NPYG +K  +E +  D+ ++D
Sbjct:    3 VLITGGTGFIGSHTAVSLVQSGYDAVILDNLCNSSAAVLPRLRQITGR---NIPFYQGDIRDCQILRQIFSEHEIESVIHFAGLKAVGESVAEPTKYYGNNVYGSLVLAEEMARAGVLKIVFSSSATVYGDAEKVPYTEDMRPGDTANPYGASKAMVERMLTDIQKAD 167          
The following BLAST results are available for this feature:
BLAST of DR406106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GAL10_PACTA4.435e-3850.29Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GALE_NEIMB5.792e-3847.06UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIMC9.880e-3847.06UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_ERWAM1.290e-3749.12UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE_PASMU2.875e-3747.65UDP-glucose 4-epimerase OS=Pasteurella multocida G... [more]
GALE_DROME2.875e-3747.70Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GALE_SALTI1.577e-3545.88UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
GALE_ECOLI2.060e-3544.71UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GALE_SALTY3.514e-3545.29UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]
GALE_NEIGO5.994e-3543.45UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae G... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L22 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406106 ID=DR406106; Name=DR406106; organism=Citrus sinensis; type=EST; length=678bp
GGGGGTCAGTTTCATTTTTTTCTTTTCCTTTAAATTTCTCTGAGCGAGGC
CAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAAATT
TTCGTGTACTTTGTGCCCTTTTTTTTGGTTCTTCTGATTGGTCTCTCCGT
TAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACATT
GGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTCGT
CGTCGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAAAG
AACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATCTC
CGGGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGGTGC
TGTCATCCATTTTGCTGGACTGGAAGCAGTTGGTGAAAGTGTGCAGAAAC
CATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGGAA
GTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCTAC
TGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTTAG
AGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTTGC
CGTGATGTCCACCGCTCAGACTCTGAAA
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