DR406102

Overview
NameDR406102
Unique NameDR406102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  +   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N+A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 80/161 (49.69%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  V   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.763e-35
Identity = 73/158 (46.20%), Postives = 101/158 (63.92%), Query Frame = 3
Query:  213 KAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            K+  K  Y  KL  LLE+Y  I + + DNV S Q+  IR+ LRG++VVLMGKNTM++R ++     T    +  L+P ++GNVG +FT GDL             APAR G +AP DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+
Sbjct:    4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPE--YERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLV 159          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  +   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  +   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  +   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  +   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  +   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 6.155e-35
Identity = 75/163 (46.01%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  198 VVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +V+  ++  K  Y  KL +L EEY + L+   DNVGS Q+Q IR+ +RG + +LMGKNTM+++ +R H  K  N +   L+P +  NVG +FTK DL            GAPA+ G +AP DV +PP NTG+ P +TSFFQ L IPTKI +GT+EI+  V LI
Sbjct:    1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.050e-34
Identity = 77/161 (47.83%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL +Y +  +   DNVGS Q+Q IR  LRG ++VLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
The following BLAST results are available for this feature:
BLAST of DR406102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RLA0_RANSY7.270e-3649.0760S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_CHICK9.495e-3649.6960S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_NEUCR2.763e-3546.2060S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_RAT3.608e-3548.4560S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_PIG3.608e-3548.4560S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_MOUSE3.608e-3548.4560S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_HUMAN3.608e-3548.4560S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN3.608e-3548.4560S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_CAEEL6.155e-3546.0160S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_ICTPU1.050e-3447.8360S acidic ribosomal protein P0 OS=Ictalurus punct... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L17 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406102 ID=DR406102; Name=DR406102; organism=Citrus sinensis; type=EST; length=686bp
GGGGATTANNCTCGCAGATAATTCTAGGGTTTTTTCTTGTACACTTCTTT
CACTCTCTTTGTATCTCGTTGAGGTTAAAGAGACGGCAATTCCGCTGCTG
TCCGCCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAAT
TTACAACTTTTTACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTA
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATG
CCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCACCGACAACG
TGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCC
GTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCA
CGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTC
AGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAA
GAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGT
TGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCT
CCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAAG
GGTACTGTTGAAATTATCACACCTGTGGAGCTTATT
back to top