DR406102

Overview
NameDR406102
Unique NameDR406102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.371e-34
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  213 KAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            K+  K  Y  KL  LLEEY  I + + DNV S Q+  IR+ LR   VVLMGKNTM++R ++       +  +  L+P ++GNVG +FT GDL             APAR G VAP+DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLV 159          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.371e-34
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL+++ +  +   DNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.791e-34
Identity = 78/161 (48.45%), Postives = 100/161 (62.11%), Query Frame = 3
Query:  204 KASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +  +A  K  Y  K+ QLL++Y +  +   DNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 3
Query:  219 EKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR       +  F  L+P ++G VG +FT   L             APAR G VAP D+ V   NTG++P +TSFFQ L +PTKI +GT+EI++ V+++
Sbjct:    6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVV 159          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  207 ASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            A   E K  Y  KL  L E+Y  + V   DNV S Q+  +R+ LRG + ++MGKNTM++R +R             L+P+++GNVG +FT  DL             APAR   +AP+DV VP GNTG++P +TSFFQ L IPTKI +GT+EI + V L+
Sbjct:    2 AISKESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLV 159          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 70/164 (42.68%), Postives = 103/164 (62.80%), Query Frame = 3
Query:  198 VVKASKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGA-PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            + K SK +KK  Y  KL  L+++Y++IL+   DNVGSNQ+ ++R+ LRG + +LMGKNT ++  ++ + +         L+PL++ N+G +F K DL             + PAR+G++APIDV +PPG TG+DPS TSF + L I TKI KG +EI   V LI
Sbjct:    1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLI 162          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 68/166 (40.96%), Postives = 96/166 (57.83%), Query Frame = 3
Query:  210 SKAEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            S +E K  Y+ +    L +Y ++L    DNV S Q+ ++RR LRG   ++MGK T+ K+ +   AE    +A+  L+        LL GN  LIFT  ++             APARVG +AP DV+VP GNTG++P  TSFFQ LNI TKI KGTVEI++  +++
Sbjct:    3 SVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVL 168          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.374e-26
Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 3
Query:  216 AEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            A K+  Y  +L QL+ E+ ++LV + D+VGS QL  IR  LRG + VLMGKNT ++  +R   ++        L+PL++ NVG IF + D              APA+ G+ AP DV +P G TG+DP  T FFQ L I TKI KG +EI   V+LI
Sbjct:    6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALRQQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPAPAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLI 160          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  216 AEKKIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            +++K  +  K  +L   Y +++VA  D VGS+QLQ IR+ +RG   VLMGK TM+++ IR  A+       LN    L+ N  +IF K ++            GAPA+ G+ AP DV++P G TG++P+QTSF Q L I TKIN+G ++I+  V +I
Sbjct:    6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY--LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHII 160          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 64/161 (39.75%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  225 KIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 686
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++RRG RG +  +MGK T+  + +   A+    +              LL GN GLIFT   +             APARVG + P DVVVP G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVL 167          
The following BLAST results are available for this feature:
BLAST of DR406102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RLA0_PODAN1.371e-3446.2060S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_DANRE1.371e-3447.8360S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0L_HUMAN1.791e-3448.4560S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_YEAST5.392e-3145.5160S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_SCHPO7.042e-3143.1360S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_PLAF87.042e-3142.6860S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_TRYCR2.120e-2740.9660S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_EIMTE1.374e-2642.6860S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_DICDI1.163e-2540.1360S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_LEICH4.888e-2439.7560S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L17 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406102 ID=DR406102; Name=DR406102; organism=Citrus sinensis; type=EST; length=686bp
GGGGATTANNCTCGCAGATAATTCTAGGGTTTTTTCTTGTACACTTCTTT
CACTCTCTTTGTATCTCGTTGAGGTTAAAGAGACGGCAATTCCGCTGCTG
TCCGCCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAAT
TTACAACTTTTTACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTA
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATG
CCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCACCGACAACG
TGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCC
GTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCA
CGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTC
AGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAA
GAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGT
TGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCT
CCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAAG
GGTACTGTTGAAATTATCACACCTGTGGAGCTTATT
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