DR406102

Overview
NameDR406102
Unique NameDR406102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  246 LCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEI 665
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G VAP D+ +  G+TG+ P    S  + + +P  I+KG + I
Sbjct:   21 LKELLKSSSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 43/141 (30.50%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  246 LCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEI 665
            L +LL+    I +     V + QLQ IR  +R    + M +NT++KR +   AE+TGN  F  L+  L     ++ T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I
Sbjct:   21 LKELLKSANVIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLIKRAVEEVAEETGNPEFAKLVDYLDKGAAIVVTEMNPFKLFKTLEESKSPAPIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 3
Query:  246 LCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEI 665
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 3
Query:  246 LCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEI 665
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGI 161          
BLAST of DR406102 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 46/148 (31.08%), Postives = 69/148 (46.62%), Query Frame = 3
Query:  225 KIAYDAKLCQLLEEYTQILVAATDNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEI 665
            KI    KL +LL+    + +     V + QLQ IR  +RG   + M +NT+++R I+  AE+TGN  F  L   +     +I T  +              AP + G VAP D+ V  G+TG+ P       + + IP  I KG + I
Sbjct:   14 KIEEVNKLKELLKNGQIVALVDMMEVPARQLQEIRDKIRGTMTLKMSRNTLIERAIKEVAEETGNPEFAKLADYIDKGAAIITTDMNPFKLYKTLEESKSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGI 161          
The following BLAST results are available for this feature:
BLAST of DR406102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RLA0_METM52.130e-1131.21Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METVS3.633e-1130.50Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM74.745e-1132.62Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM64.745e-1132.62Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METTL8.094e-1131.08Acidic ribosomal protein P0 homolog OS=Methanococc... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L17 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406102 ID=DR406102; Name=DR406102; organism=Citrus sinensis; type=EST; length=686bp
GGGGATTANNCTCGCAGATAATTCTAGGGTTTTTTCTTGTACACTTCTTT
CACTCTCTTTGTATCTCGTTGAGGTTAAAGAGACGGCAATTCCGCTGCTG
TCCGCCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAAT
TTACAACTTTTTACCACCAACAAAAGTAGAACCAAATCCACGAAATGGTA
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATG
CCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCACCGACAACG
TGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTCC
GTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCA
CGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTC
AGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAA
GAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGT
TGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCT
CCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAAG
GGTACTGTTGAAATTATCACACCTGTGGAGCTTATT
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