DR406094

Overview
NameDR406094
Unique NameDR406094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  250 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            A  R+ K++++L+  P    +   + +        I+ P +  + GG F  +  F   YP  PPKV    K+FHPNI+ +G ICL+IL+E WSPAL +  ++L + SL  +PN +DPL  E A +   D
Sbjct:   33 AKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKD 161          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  226 GLLRNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            G  + +  A  RI K++ +L    P +C       DD+ +++  I  P +  +  G F+ S      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +
Sbjct:   22 GSSKKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  319 PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            P+ D +F W A I GP  SPF   ++ + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++ K D
Sbjct:   36 PLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCD 164          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 591
            R S     RI +++  + K+PP      P   DM    A I GP D+P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ NP
Sbjct:   54 RASNQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTE-NP 180          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  217 FSDGLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVA---------------FRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 627
            FSD +   +     R  KE+ +      A        +++   +  I GP  +P+AGG F + +  P  YPF+PPKV                F T+++HPNI+S  G+ICLDILK++W+ +LT+  VLLS+ ++L  P P DP    +A  +
Sbjct:   11 FSDKMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQF 163          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  250 ASKRINKELKDLQKDPPAS----CSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD 636
            ASKR+ KEL+DLQK+ P      CS     D++  W A ++ P   P+    F + I FP +YPF+PP V F T+++HPN++ +G +CL I+ K+ W  +    +VL ++  L+  P P  P+  E+A     D
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQD 132          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  247 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFH 471
            MA K I+KE  +L +DP   CSAGPV DDM HWQATI  P+DS + GGVF   + FP DY FKPPK+ F   ++H
Sbjct:    1 MALKLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFF--LKFPSDYLFKPPKIKFTNGIYH 73          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 591
            R S     RI +++  + K+PP      P   DM    A I GP D+P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ NP
Sbjct:   54 RASTQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTE-NP 180          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 591
            R +     RI +++  + K+PP      P   DM    A I GP D+P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ NP
Sbjct:   97 RTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTE-NP 223          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 591
            R +     RI +++  + K+PP      P   DM    A I GP D+P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ NP
Sbjct:   97 RTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTE-NP 223          
The following BLAST results are available for this feature:
BLAST of DR406094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UBC12_CANGA5.970e-1835.66NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC12_BOVIN5.970e-1834.06NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBCX_PICAN7.797e-1836.43Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBE2Z_XENTR1.018e-1740.63Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBC21_CAEEL1.018e-1733.33Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UB2L6_BOVIN1.018e-1736.57Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
U2D2L_HUMAN1.018e-1756.00Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBE2Z_XENLA1.330e-1740.63Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_RAT1.330e-1740.63Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE1.330e-1740.63Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406094 ID=DR406094; Name=DR406094; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTAAATTTCNNAATTATTTCATTAATTTTTAAAATTCCCCA
ATAATCACGCCTTCGTCCCTGATTTTGGTTTGAATTTATAAATAAAGGTT
GTTGCTTCAAATCTGTCGGTACAATTTTTGTACTTTTTAGAATTAGGGTT
AGGGTTTGTGATCGTGTTTTCGATTCTGTTTGCTTTTAAGATATAACCCT
CGAAGTACGGCACTGTTTCTCTGATGGTTTGTTGAGAAATTCCCAGATGG
CTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGACCCTCCT
GCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAGC
AACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTG
TATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCC
TTCCGTACTAAGGTTTTCCACCCTAACATCAATAGCAATGGTAGCATCTG
TCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGG
TACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCCA
CTTGTGCCTGAGATTGCTCACATGTACAAGACTGACA
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