DR406094

Overview
NameDR406094
Unique NameDR406094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  250 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 588
            A KRI +E+K++Q +P     + P+ +++F WQ  I GP D+ F GG++   I  P DYPFKPP     T   +    +N  ICL I     E W P+ ++   L+++ + + T PN
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTP--NGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPN 126          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  256 KRINKELKDLQKDPPASCSAGP--VADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 579
            KR+ KEL  LQ DPP   +     V + +  W   + G   + + G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 41/134 (30.60%), Postives = 67/134 (50.00%), Query Frame = 1
Query:  241 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT 633
            ++ A KR+ KE K + ++PP    A P  D++  W   I GP+D+P+ GG +  ++ FP DYP+KPP +   T   +     N  +CL   D   + W+P  ++S +L  + S +T        +    H  KT
Sbjct:    3 TKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKT 134          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  256 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 591
            KR+ KE + L K+P +   A P  +D+  W   + G   +PFAGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 120          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  256 KRINKELKDLQKDPPASCSAGP--VADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 579
            KR+ KEL  LQ DPP   +     V + +  W   + G   + + G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  241 SQMASKRINKE----LKDLQKDPPASC-------SAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 630
            S     RI KE    LK L  D P +        S  P+ + D+  W+A I GPSD+P+    F + I  P  YP  PPK++F +  + H N+ S  G ICL+ILK E+W+P   +   + ++  LL +P  D PL  +I ++ +
Sbjct:   15 SDTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 159          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  358 MGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 603
            + P +  + GG F  S+ F   YP +PP V     ++HPNI+ +G+ICL++L+E WSP + +  V+L +  L  +PN  DPL
Sbjct:   65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPL 146          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTD 636
            R   +  K + KE+ +L+ + P +C       +  H     + P +  + GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRD 168          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTD 636
            R   +  K + KE+ +L+ + P +C       +  H     + P +  + GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRD 168          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.522e-13
Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTD 636
            R   +  K + KE+ +L+ + P +C       +  H     + P +  + GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRD 168          
The following BLAST results are available for this feature:
BLAST of DR406094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UBC32_ARATH3.066e-1435.04Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBE2W_MOUSE4.004e-1439.29Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBC6_YEAST4.004e-1430.60Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC33_ARATH4.004e-1433.91Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]
UBE2W_HUMAN5.230e-1439.29Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBCX_YEAST5.230e-1434.48Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBC12_ASHGO6.830e-1439.02NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBE2F_RAT8.920e-1432.62NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UB2FA_MOUSE8.920e-1432.62NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_HUMAN1.522e-1332.62NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406094 ID=DR406094; Name=DR406094; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTAAATTTCNNAATTATTTCATTAATTTTTAAAATTCCCCA
ATAATCACGCCTTCGTCCCTGATTTTGGTTTGAATTTATAAATAAAGGTT
GTTGCTTCAAATCTGTCGGTACAATTTTTGTACTTTTTAGAATTAGGGTT
AGGGTTTGTGATCGTGTTTTCGATTCTGTTTGCTTTTAAGATATAACCCT
CGAAGTACGGCACTGTTTCTCTGATGGTTTGTTGAGAAATTCCCAGATGG
CTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGACCCTCCT
GCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAGC
AACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTG
TATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCC
TTCCGTACTAAGGTTTTCCACCCTAACATCAATAGCAATGGTAGCATCTG
TCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGG
TACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCCA
CTTGTGCCTGAGATTGCTCACATGTACAAGACTGACA
back to top