DR406094

Overview
NameDR406094
Unique NameDR406094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  268 KELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTD 636
            KE+ +L+ + P++C    P  + + H+Q  I  P +  + GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  + A  +  D
Sbjct:   39 KEVAELEANLPSTCKVTFPDENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRD 168          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  364 PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIA 618
            P    +AGG +  ++     YP +PP V    +++HPNI+ +G++CL++L+E W+PAL I  +++ I  L  +PN  DPL  + A
Sbjct:   67 PDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAA 151          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 52/174 (29.89%), Postives = 79/174 (45.40%), Query Frame = 1
Query:  250 ASKRINKELKDLQKDPPASCSAG-----------PVADDMFH-WQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRT----------------------------------KVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 630
            A KR+ +E + + K+     SA            PV++D F+ W A + GP+D+ +    + + I  P +YP +PPK  F                                    ++ HPNI  N G ICLDIL+ +W+PA T+S  L +I  LL DP P  PL  ++A++ K
Sbjct:    3 AEKRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMK 176          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 44/141 (31.21%), Postives = 66/141 (46.81%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTD 636
            R   +  + + KE+ +L+ + P +C       +  H     + P +  + GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D
Sbjct:   28 RRVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRD 168          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 38/116 (32.76%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  241 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 579
            S  A+KR+ KE K++  +PP    A P  D++  W   I GP  +P+  G +  ++ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:    3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 36/116 (31.03%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  241 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 579
            ++ A KR+ KE K + ++PP    A P  +++  W   I GP D+P+ GG +  ++ FP DYP+KPP +   T   +     N  +CL   D   + W+P  +++ +L  + S +T
Sbjct:    3 TKQAQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  250 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 576
            A KR+ KE  +L KDP     A P+ D++F W  T+ GP DS F GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  250 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 576
            A KR+ KE  +L KDP     A P+ D++F W  T+ GP DS F GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.288e-12
Identity = 46/141 (32.62%), Postives = 65/141 (46.10%), Query Frame = 1
Query:  235 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTD 636
            R   M  K +  E+ +L+ + P +C       +  H     + P +  + GG F   I  P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  D
Sbjct:   28 RRFSMRDKLLVTEVAELEANLPWTCKVHFPDPNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQD 168          
BLAST of DR406094 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  241 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 579
            S+ + KR+ KE K +  +PP   SA P  +++  W   I GP  +PF  G +   + FP +YPFKPP ++  T   +     N  +CL   D   + W+PA +++ +L  + S +T
Sbjct:    3 SRQSQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITP--NGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMT 116          
The following BLAST results are available for this feature:
BLAST of DR406094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UBE2F_DANRE1.987e-1335.11NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBC12_KLULA1.987e-1336.47NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBCX_PICPA3.390e-1329.89Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UBE2F_BOVIN7.552e-1331.21NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UBC6_KLULA7.552e-1332.76Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_CANGA7.552e-1331.03Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UB2J1_MOUSE7.552e-1338.39Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN7.552e-1338.39Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UB2FB_MOUSE1.288e-1232.62NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBC6_DEBHA1.682e-1231.90Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406094 ID=DR406094; Name=DR406094; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTAAATTTCNNAATTATTTCATTAATTTTTAAAATTCCCCA
ATAATCACGCCTTCGTCCCTGATTTTGGTTTGAATTTATAAATAAAGGTT
GTTGCTTCAAATCTGTCGGTACAATTTTTGTACTTTTTAGAATTAGGGTT
AGGGTTTGTGATCGTGTTTTCGATTCTGTTTGCTTTTAAGATATAACCCT
CGAAGTACGGCACTGTTTCTCTGATGGTTTGTTGAGAAATTCCCAGATGG
CTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGACCCTCCT
GCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATTGGCAAGC
AACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTG
TATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCC
TTCCGTACTAAGGTTTTCCACCCTAACATCAATAGCAATGGTAGCATCTG
TCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGG
TACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAGATGACCCA
CTTGTGCCTGAGATTGCTCACATGTACAAGACTGACA
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