DR406093

Overview
NameDR406093
Unique NameDR406093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:427..1177. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406093 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  172 SALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILLISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 495
            S+ ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of DR406093 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  106 RRTNVFDPVS----LDVWDPFDGFLSSALTNAPSSARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILLISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 495
            +RT  +DP      L  WDPF+      L N P  A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRVS-VSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of DR406093 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 1
Query:  154 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILLISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 492
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of DR406093 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  220 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILLI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 495
            A   +DW+ETP AHVF+ DLPGL           G IL +              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of DR406093 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  184 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILLISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 495
            N PS    R+    A    D  E P A+ F  D+PG++            +L++SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of DR406093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_IPONI3.526e-1340.5417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
SP21_STIAU1.340e-1234.07Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP16_ORYSJ1.750e-1236.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS178_ORYSJ1.750e-1238.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS176_ARATH3.899e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406093 ID=DR406093; Name=DR406093; organism=Citrus sinensis; type=EST; length=753bp
GGGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCAT
TTAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCG
GTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGAT
CCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGC
TAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTC
CTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAA
GTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCTGATAAGCGGAGAGAG
GAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGA
GCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTG
GAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTCC
TAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGCT
AAGTGATAACTGTAGATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATAA
ATTTGGTACGAAAGCAAAGCCCTTGTGTGTTTGTATGTNGTGTGTNGTGT
TCGTTTTCTTCCCTTCCCCCTGTTTAATTTNNNGTGANNNTGTTTGTGTG
TTTGCAAGAGCTTCAGGAGCCAGTCTCAAGCGTTGTAACTAGTTTTTTAA
TGA
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