DR406062

Overview
NameDR406062
Unique NameDR406062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6306 contig Csv1_Contig6306:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_MOUSE (UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.014e-44
Identity = 98/171 (57.31%), Postives = 121/171 (70.76%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            + +LVTGGAGYIGSHTVL+LL  GY  VV+DN  NA         ++ +V+EL G    ++ F ++D+ D+AAL+ LF K  F AVIHFAGL+AVGESVQKPL Y+  NL GTI LLE+M AHG KNLVFSSSATVYG P+ +P  E  P     NPYG++K FIEE+ RD
Sbjct:    2 EKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNAIRGEDSMPESLRRVQELTGR---SVEFEEMDILDQAALQHLFKKHSFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRD 169          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: YGRE_SCHPO (Uncharacterized protein C365.14c OS=Schizosaccharomyces pombe GN=SPBC365.14c PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.074e-41
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPK----VVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            +LVTGGAGYIGSHT + LL  GY  V+VDNL N+   AV ++++L G +   + FH++DL D+ AL+ +FA     AVIHFAGL+AVGESVQ PL Y+ NN+ GTI L+E M  +  ++ VFSSSATVYG P      +P  E  P E  +PYGRTKLFIE I  D
Sbjct:    9 VLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSRVEAVHRIEKLTGKK---VIFHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLIECMKKYNVRDFVFSSSATVYGDPTRPGGTIPIPESCPREGTSPYGRTKLFIENIIED 171          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 86/172 (50.00%), Postives = 118/172 (68.60%), Query Frame = 3
Query:  153 DSMAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            +S +K +LVTGGAGYIGSHTV++L+  GY  VV DNL N++  +VA+++ L  +   ++ F+++DL D+  LE +F + K  +VIHFAGL+AVGES Q PL Y+ NN++GT+ LLE+M  +     VFSSSATVYG    +P ++P  EE PL   NPYG TK  IE I  D
Sbjct:    8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH---HIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILND 176          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            ILVTGGAGYIGSHTV++L+  GYK ++VDNL N+   AVA+V+ +      ++ F KLDLRDK  L  +F   K   VIHFA L+AVGES++ PL Y+DNN+ GTITLL VM  H  K +VFSSSATVYG    +  ++P  E  P +  NPYG+TK  IE I +D
Sbjct:    8 ILVTGGAGYIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEFIVRK---SIKFFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDNNICGTITLLNVMREHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENIIKD 170          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.882e-40
Identity = 89/168 (52.98%), Postives = 114/168 (67.86%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRD 656
            K  LVTGGAGYIGSHTV++L   GYK +VVDNL N+S  +VA+++ L G +   + F K+DL +   L  LF   K  +V+HFAGL+AVGES Q PL Y+ NN++GTI LLE M +H  K LVFSSSATVYG    +  ++P  E  P    NPYG+TKL IE++ RD
Sbjct:    5 KYCLVTGGAGYIGSHTVVELCEAGYKCIVVDNLSNSSYESVARMELLTGQE---IKFAKIDLCELEPLNKLFDDYKIDSVLHFAGLKAVGESTQIPLTYYFNNIVGTINLLECMKSHDVKKLVFSSSATVYGDATRFENMIPIPETCPTGPTNPYGKTKLTIEDMMRD 169          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.003e-39
Identity = 94/174 (54.02%), Postives = 119/174 (68.39%), Query Frame = 3
Query:  159 MAKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLE--AMNPYGRTKLFIEEICRD 656
            M + +LVTGGAGYIGSHTVL+LL  GY  VV+DN  N+         ++ +V+EL G    ++ F ++D+ D+AAL+ LF K  F AVIHFAGL+AVGESVQKPL Y+  NL GTI LLE+M A G K+LVFSSSATVYG P  VP +   P       PYG++K FIEE+ +D
Sbjct:    1 MEEKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNSIRGEDSMPESLRRVQELTGR---SVEFEEMDILDQAALQHLFKKHNFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAMGVKSLVFSSSATVYGKP--VPASGRGPPHRGCTKPYGKSKFFIEEMIQD 169          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 84/163 (51.53%), Postives = 117/163 (71.78%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            ILVTGGAGYIGSHTV++LL  G + VV+DNL N+S  ++ +VK++ G +     F++ D+ D+A L+ +FA+ +  +VIHFAGL+AVGESVQKP  Y+ NN+ GT+ L++ M   G  N VFSSSATVYG PK++P TE+  +    NPYG +K  +E+I RD
Sbjct:    3 ILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLERVKQITGKEAK---FYEGDILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNFVFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQILRD 162          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.493e-39
Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 3
Query:  171 ILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            +LVTGG+GYIGSHT +QL+  GYK V++DNL N+    +A++  L G   +    +  D+RD+  L+++FA     AVIHFAGL+AVGESV +PL Y++NN+ GT+ LLE M A   KNL+FSSSATVYG    +P  E FP     +PYGR+KL +E+I +D
Sbjct:    3 VLVTGGSGYIGSHTCVQLIEAGYKPVILDNLCNSKSSVLARIHSLTGYTPE---LYAGDIRDRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTLVLLEAMRAAQVKNLIFSSSATVYGDQPQIPYVESFPTGSPSSPYGRSKLMVEQILQD 162          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 82/164 (50.00%), Postives = 118/164 (71.95%), Query Frame = 3
Query:  168 NILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            +IL+TGGAGYIGSHTVL LL  G   VV+DNL N+S  ++A+V ++ G + +   F+  D+ D++ L+ +F+  K  +VIHFAGL++VGESV+KP+ Y+ NN++G+ITLLE M     K L+FSSSATVYG P+ VP TE+  +    NPYG +K+ +E+I +D
Sbjct:    2 SILITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICGRKPN---FYHGDILDRSCLKLIFSSHKIDSVIHFAGLKSVGESVEKPIEYYQNNVVGSITLLEEMCLANVKKLIFSSSATVYGEPEFVPLTEKARIGGTTNPYGTSKVMVEQILKD 162          
BLAST of DR406062 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 81/165 (49.09%), Postives = 116/165 (70.30%), Query Frame = 3
Query:  165 KNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGNQGDNMTFHKLDLRDKAALEALFAKTKFGAVIHFAGLEAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRD 656
            KNILVTGG G+IGSHTV+ LL  G++ V++DNL N+S   + ++K + G +   + F++ D+RD+  L  +FA+ +  +VIHFAGL+AVGESV +P+ Y+DNN+ G++ L E MA  G  ++VFSSSATVYG P  VP TE+ PL +  +PYG +K  +E I  D
Sbjct:    2 KNILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRLKTITGQE---IPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPLGDTTSPYGTSKSMVERILTD 163          
The following BLAST results are available for this feature:
BLAST of DR406062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GALE_MOUSE3.014e-4457.31UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE... [more]
YGRE_SCHPO9.074e-4153.61Uncharacterized protein C365.14c OS=Schizosaccharo... [more]
GAL10_YEAST4.503e-4050.00Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]
GAL10_SCHPO4.503e-4053.61Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GAL10_KLULA5.882e-4052.98Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]
GALE_RAT1.003e-3954.02UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
GALE_HAEIN2.919e-3951.53UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]
GALE_YERPE8.493e-3950.31UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
GALE_YEREN1.449e-3850.00UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]
GALE_NEIMA4.215e-3849.09UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248J17 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248J17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406062 ID=DR406062; Name=DR406062; organism=Citrus sinensis; type=EST; length=658bp
GGGGGTCAGTTTCATTTTTTTCTTTTCCTTTAAATTTCTCTGAGCGAGGC
CAAGCCCAAGTCTCATCACTTCCTTCGTAATTCCCCCGTTTCTTCAAATT
TTCGTGTACTTTGTGCCCTTTTTTTTGGTTCTTCTGATTGGTCTCTCCGT
TAGACTCCATGGCTAAGAACATTTTGGTGACCGGTGGCGCCGGTTACATT
GGAAGCCACACCGTGCTTCAGTTGCTGTTAGGCGGTTACAAAACTGTCGT
CGTCGACAATCTCGATAATGCCTCGGAAATCGCCGTCGCAAAAGTCAAAG
AACTCGCTGGCAATCAAGGCGACAACATGACCTTTCATAAGTTGGATCTC
CGGGACAAAGCAGCGCTGGAAGCATTGTTTGCCAAAACAAAGTTCGGTGC
TGTCATCCATTTTGCTGGACTGGAAGCAGTTGGTGAAAGTGTGCAGAAAC
CATTGCTGTATTTTGACAACAATCTTATTGGAACCATAACTCTCTTGGAA
GTTATGGCAGCACATGGCTGCAAAAATCTGGTCTTTTCATCATCAGCTAC
TGTTTATGGCTGGCCAAAGGTGGTTCCGTGTACAGAAGAGTTCCCGTTAG
AGGCAATGAACCCTTATGGACGTACCAAGCTTTTCATTGAAGAGATTTGC
CGTGATGT
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