DR406026

Overview
NameDR406026
Unique NameDR406026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3949 contig Csv1_Contig3949:517..1187. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_COFAR (DNA-directed RNA polymerase subunit beta OS=Coffea arabica GN=rpoB PE=3 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 3.984e-116
Identity = 205/221 (92.76%), Postives = 211/221 (95.48%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDK+GIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKIL RQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELY+ASKQTANPWVFE EYPGKSRIFDGRTG+PF
Sbjct:  712 LLRNLDKSGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILTRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTANPWVFEAEYPGKSRIFDGRTGNPF 932          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_AMBTC (DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda GN=rpoB PE=3 SV=2)

HSP 1 Score: 417.157 bits (1071), Expect = 3.984e-116
Identity = 203/221 (91.86%), Postives = 209/221 (94.57%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NGIVMLGSWVETGD+LVGKLTPQ AKESSYAPEDRLLR IL IQVST KETCLKLPIGGRGRVIDVRW+QKKG SSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRI PFDERYEQEASRKLVF ELYEASK+TANPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  718 LLRNLDRNGIVMLGSWVETGDVLVGKLTPQTAKESSYAPEDRLLRVILGIQVSTAKETCLKLPIGGRGRVIDVRWIQKKGASSYNPEKIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRITPFDERYEQEASRKLVFPELYEASKRTANPWVFEPEYPGKSRIFDGRTGDPF 938          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_NYMAL (DNA-directed RNA polymerase subunit beta OS=Nymphaea alba GN=rpoB PE=3 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 5.203e-116
Identity = 204/221 (92.31%), Postives = 209/221 (94.57%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NGIVMLGSWVETGD+LVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW QKKGGS YNPE I VYI QKR+IKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQ+FECSLGLAG LL RHYRI PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  717 LLRNLDRNGIVMLGSWVETGDVLVGKLTPQTAKESSYAPEDRLLRAILGIQVSTAKETCLKLPIGGRGRVIDVRWGQKKGGSIYNPEMIRVYISQKRKIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYRITPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 937          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LOTJA (DNA-directed RNA polymerase subunit beta OS=Lotus japonicus GN=rpoB PE=3 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 8.874e-116
Identity = 202/221 (91.40%), Postives = 211/221 (95.48%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNG+V+LGSWVE GDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+ KKGGS YNPETI +YILQKREIKVGDKVAGRHGNKGIVSKIL RQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG +L+RHYRIAPFDERYEQEASRKLVFSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PF
Sbjct:  716 LLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPF 936          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_IPOPU (DNA-directed RNA polymerase subunit beta OS=Ipomoea purpurea GN=rpoB PE=3 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 9.812e-115
Identity = 199/220 (90.45%), Postives = 209/220 (95.00%), Query Frame = 2
Query:   11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            +RNLDKNGIV  GSWVETGD+LVGKLTPQ  KESSYAPEDRLLRAIL IQVST KETCLK+PIGGRGRVIDVRW+QKKGGSSYNPE I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VD+VFNPLGVPSRMN+GQIFECSLGLAG LL+RHYRIAPFDERYEQEASRK+VFSELYEASKQTANPW FEPEYPGKSRIFDGRTG+PF
Sbjct:  714 IRNLDKNGIVKQGSWVETGDVLVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKVPIGGRGRVIDVRWIQKKGGSSYNPEMIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDLVFNPLGVPSRMNLGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKVVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNPF 933          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PHAVU (DNA-directed RNA polymerase subunit beta OS=Phaseolus vulgaris GN=rpoB PE=3 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.186e-114
Identity = 198/221 (89.59%), Postives = 212/221 (95.93%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIV+LGSWVETGD+LVGKLTPQ AKESSY+PEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QKKGGSSYNPETI + ILQKREIKVGDKVAGRHGNKGIVSKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGL+GG+L++HYRI PFDERYEQEASRKLVFSELYEASK+T+NPW+FEPEYPGKS+IFDGRTG+ F
Sbjct:  716 LLRNLDKNGIVILGSWVETGDVLVGKLTPQMAKESSYSPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIRISILQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGEPVDMVFNPLGVPSRMNVGQIFECSLGLSGGMLDKHYRITPFDERYEQEASRKLVFSELYEASKKTSNPWIFEPEYPGKSKIFDGRTGNSF 936          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_DIOEL (DNA-directed RNA polymerase subunit beta OS=Dioscorea elephantipes GN=rpoB PE=3 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 1.085e-113
Identity = 201/221 (90.95%), Postives = 206/221 (93.21%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NGIVMLGSW+ETGDILVGKLTPQ A ESSYAPEDRLLRAIL IQVST KET LKL IGGRGRVIDVRW+QK+GGS YNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL RHYRIAPFDERYEQEASRKLVFSELY ASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  716 LLRNLDRNGIVMLGSWIETGDILVGKLTPQTATESSYAPEDRLLRAILGIQVSTAKETSLKLSIGGRGRVIDVRWIQKRGGSIYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYSASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 936          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CUSEX (DNA-directed RNA polymerase subunit beta OS=Cuscuta exaltata GN=rpoB PE=3 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.199e-112
Identity = 196/221 (88.69%), Postives = 206/221 (93.21%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            L+RNLDKNGIV+ GSWVE GD+LVGKLTPQ  KESSYAPEDRLLRAIL IQVS  KETCLK+PIGGRGRVIDVRW+QKKGG  YNPE I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VD+VFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRK+VFSELYEASKQTANPW FEPEYPGKSRIFDGRTG+ F
Sbjct:  716 LIRNLDKNGIVLQGSWVEPGDVLVGKLTPQVVKESSYAPEDRLLRAILGIQVSASKETCLKVPIGGRGRVIDVRWIQKKGGYGYNPEKIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNTF 936          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CUSRE (DNA-directed RNA polymerase subunit beta OS=Cuscuta reflexa GN=rpoB PE=2 SV=2)

HSP 1 Score: 399.053 bits (1024), Expect = 1.123e-110
Identity = 193/221 (87.33%), Postives = 203/221 (91.86%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            L+RNLDKNGIV+ GSWVE GD+LVGKLTPQ  KES+YAPEDRLLRAIL I VS  KETCLK+PIG RGRVIDVRW+QKKGG  YNPE I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VD+VFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRK+VFSELYEASKQTANPW FEPEYPGKSRIFDGRTG  F
Sbjct:  716 LIRNLDKNGIVLQGSWVEPGDVLVGKLTPQVVKESAYAPEDRLLRAILGIPVSASKETCLKVPIGARGRVIDVRWIQKKGGYGYNPEKIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGKTF 936          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PHAAO (DNA-directed RNA polymerase subunit beta OS=Phalaenopsis aphrodite subsp. formosana GN=rpoB PE=3 SV=2)

HSP 1 Score: 395.201 bits (1014), Expect = 1.621e-109
Identity = 194/222 (87.39%), Postives = 204/222 (91.89%), Query Frame = 2
Query:    5 RLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            RLLRNLD+NGIVMLGSW+ETGDILVGKLTPQ A ESSYAPEDRLLRAIL IQVST KET L+LPIGGRGRVIDVRW+ ++G S+ NPE I VYI QKREIKVGDKVAGRHGNKGI+SKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL +HYRI PFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGD F
Sbjct:  715 RLLRNLDRNGIVMLGSWIETGDILVGKLTPQTASESSYAPEDRLLRAILGIQVSTSKETSLRLPIGGRGRVIDVRWIHRRGVSNSNPERIRVYISQKREIKVGDKVAGRHGNKGIISKILSRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIGPFDERYEQEASRKLVFSELYEASKKTKNPWVFEPEYPGKSRIFDGRTGDLF 936          
The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOB_COFAR3.984e-11692.76DNA-directed RNA polymerase subunit beta OS=Coffea... [more]
RPOB_AMBTC3.984e-11691.86DNA-directed RNA polymerase subunit beta OS=Ambore... [more]
RPOB_NYMAL5.203e-11692.31DNA-directed RNA polymerase subunit beta OS=Nympha... [more]
RPOB_LOTJA8.874e-11691.40DNA-directed RNA polymerase subunit beta OS=Lotus ... [more]
RPOB_IPOPU9.812e-11590.45DNA-directed RNA polymerase subunit beta OS=Ipomoe... [more]
RPOB_PHAVU2.186e-11489.59DNA-directed RNA polymerase subunit beta OS=Phaseo... [more]
RPOB_DIOEL1.085e-11390.95DNA-directed RNA polymerase subunit beta OS=Diosco... [more]
RPOB_CUSEX1.199e-11288.69DNA-directed RNA polymerase subunit beta OS=Cuscut... [more]
RPOB_CUSRE1.123e-11087.33DNA-directed RNA polymerase subunit beta OS=Cuscut... [more]
RPOB_PHAAO1.621e-10987.39DNA-directed RNA polymerase subunit beta OS=Phalae... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H24 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bp
GGGCCGGTTACTCCGCAATTTAGACAAAAATGGAATTGTGATGCTGGGAT
CTTGGGTAGAGACCGGCGATATTTTAGTAGGTAAATTAACGCCTCAGGCG
GCGAAAGAATCATCGTATGCTCCGGAAGATAGATTATTACGGGCCATACT
TGACATTCAGGTATCCACTCCAAAGGAAACTTGCCTAAAACTACCTATAG
GTGGTAGGGGTCGCGTTATTGATGTGAGATGGGTCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTTGTGTATATATTTTACAGAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTGCCTAGACAGGATATGCCTTATTTGCAAGATGGAAGG
CCTGTTGATATGGTTTTCAACCCACTAGGAGTACCCTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCGCTCGGGTTAGCGGGGGGTCTGCTAAATC
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCG
AGAAAACTCGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACCGCGAA
TCCATGGGTATTTGAGCCGGAATACCCGGGAAAAAGCAGAATATTTGATG
GACGAACGGGAGATCCTTTTG
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