DR406026

Overview
NameDR406026
Unique NameDR406026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LACSA (DNA-directed RNA polymerase subunit beta OS=Lactuca sativa GN=rpoB PE=3 SV=2)

HSP 1 Score: 394.43 bits (1012), Expect = 2.765e-109
Identity = 197/222 (88.74%), Postives = 204/222 (91.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQK-KGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLR IL ++V T KETCLKLPIGGRGRVIDVRWVQ  K   +   E+I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFE SLGLAGGLL+RHYRIAPFDERYEQEASRKLVFSELYEASKQT NPW+FEPE PGKSRIFDGRTGDPF
Sbjct:  705 LLRNLDKNGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRTILGMRVYTSKETCLKLPIGGRGRVIDVRWVQSSKTDETEKTESIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTVNPWIFEPESPGKSRIFDGRTGDPF 926          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_HELAN (DNA-directed RNA polymerase subunit beta OS=Helianthus annuus GN=rpoB PE=3 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 6.160e-109
Identity = 197/222 (88.74%), Postives = 204/222 (91.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQK-KGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLR IL ++V T KETCLKLPIGGRGRVIDVRWVQ  K   +   E+I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFE SLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPW+FEPE PGKSRIFDGRTGDPF
Sbjct:  705 LLRNLDKNGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRTILGMRVYTSKETCLKLPIGGRGRVIDVRWVQSSKTDETEKTESIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWIFEPESPGKSRIFDGRTGDPF 926          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_JASNU (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum GN=rpoB PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.861e-106
Identity = 190/221 (85.97%), Postives = 203/221 (91.86%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSWVETG ILVGKLTP+  KES   P +RL+  I+ IQVST K+TCLKLPIGGRGRVIDVRW+QK+G +  NPETI +YI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLL+RHYRI PFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGR+G+PF
Sbjct:  714 LLRNLDKNGIVMLGSWVETGAILVGKLTPEVVKES---PANRLVYDIVGIQVSTSKDTCLKLPIGGRGRVIDVRWIQKRGDND-NPETIRIYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTTNPWVFEPEYPGKSRIFDGRSGNPF 930          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PELHO (DNA-directed RNA polymerase subunit beta OS=Pelargonium hortorum GN=rpoB PE=3 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.122e-101
Identity = 180/221 (81.45%), Postives = 195/221 (88.24%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNG+V+LGSWVE GDILVGKLTP+  + S   PE RL+ A+ D  + T +++CLKLPI GRGRVIDVRW+ K   S  NPE I VYILQKR+IKVGDKVAGRHGNKGIVSKILP QDMPYLQDGRP+DMVFNPLGVPSRMNVGQIFECSLGLAGGLL+RHYRIAPFDERYE+EASRKLVFSELYEASKQT NPWVFEPEYPGKS IFDGRTGDPF
Sbjct:  721 LLRNLDKNGVVILGSWVEAGDILVGKLTPELVELS---PEKRLIEALFDAPIGTTRQSCLKLPIWGRGRVIDVRWIHKGSASRSNPERIRVYILQKRKIKVGDKVAGRHGNKGIVSKILPIQDMPYLQDGRPLDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEEEASRKLVFSELYEASKQTGNPWVFEPEYPGKSIIFDGRTGDPF 938          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SORBI (DNA-directed RNA polymerase subunit beta OS=Sorghum bicolor GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SACOF (DNA-directed RNA polymerase subunit beta OS=Saccharum officinarum GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SACHY (DNA-directed RNA polymerase subunit beta OS=Saccharum hybrid GN=rpoB PE=2 SV=2)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSJ (DNA-directed RNA polymerase subunit beta OS=Oryza sativa subsp. japonica GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSI (DNA-directed RNA polymerase subunit beta OS=Oryza sativa subsp. indica GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSA (DNA-directed RNA polymerase subunit beta OS=Oryza sativa GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOB_LACSA2.765e-10988.74DNA-directed RNA polymerase subunit beta OS=Lactuc... [more]
RPOB_HELAN6.160e-10988.74DNA-directed RNA polymerase subunit beta OS=Helian... [more]
RPOB_JASNU2.861e-10685.97DNA-directed RNA polymerase subunit beta OS=Jasmin... [more]
RPOB_PELHO2.122e-10181.45DNA-directed RNA polymerase subunit beta OS=Pelarg... [more]
RPOB_SORBI2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Sorghu... [more]
RPOB_SACOF2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Saccha... [more]
RPOB_SACHY2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Saccha... [more]
RPOB_ORYSJ2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]
RPOB_ORYSI2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]
RPOB_ORYSA2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H24 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bp
GGGCCGGTTACTCCGCAATTTAGACAAAAATGGAATTGTGATGCTGGGAT
CTTGGGTAGAGACCGGCGATATTTTAGTAGGTAAATTAACGCCTCAGGCG
GCGAAAGAATCATCGTATGCTCCGGAAGATAGATTATTACGGGCCATACT
TGACATTCAGGTATCCACTCCAAAGGAAACTTGCCTAAAACTACCTATAG
GTGGTAGGGGTCGCGTTATTGATGTGAGATGGGTCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTTGTGTATATATTTTACAGAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTGCCTAGACAGGATATGCCTTATTTGCAAGATGGAAGG
CCTGTTGATATGGTTTTCAACCCACTAGGAGTACCCTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCGCTCGGGTTAGCGGGGGGTCTGCTAAATC
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCG
AGAAAACTCGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACCGCGAA
TCCATGGGTATTTGAGCCGGAATACCCGGGAAAAAGCAGAATATTTGATG
GACGAACGGGAGATCCTTTTG
back to top