DR406026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LACSA (DNA-directed RNA polymerase subunit beta OS=Lactuca sativa GN=rpoB PE=3 SV=2) HSP 1 Score: 394.43 bits (1012), Expect = 2.765e-109 Identity = 197/222 (88.74%), Postives = 204/222 (91.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQK-KGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNGIVMLGSWVETGDILVGKLTPQ KESSYAPEDRLLR IL ++V T KETCLKLPIGGRGRVIDVRWVQ K + E+I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFE SLGLAGGLL+RHYRIAPFDERYEQEASRKLVFSELYEASKQT NPW+FEPE PGKSRIFDGRTGDPF Sbjct: 705 LLRNLDKNGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRTILGMRVYTSKETCLKLPIGGRGRVIDVRWVQSSKTDETEKTESIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTVNPWIFEPESPGKSRIFDGRTGDPF 926
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_HELAN (DNA-directed RNA polymerase subunit beta OS=Helianthus annuus GN=rpoB PE=3 SV=1) HSP 1 Score: 393.275 bits (1009), Expect = 6.160e-109 Identity = 197/222 (88.74%), Postives = 204/222 (91.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQK-KGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNGIVMLGSWVETGDILVGKLTPQ KESSYAPEDRLLR IL ++V T KETCLKLPIGGRGRVIDVRWVQ K + E+I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFE SLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPW+FEPE PGKSRIFDGRTGDPF Sbjct: 705 LLRNLDKNGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRTILGMRVYTSKETCLKLPIGGRGRVIDVRWVQSSKTDETEKTESIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWIFEPESPGKSRIFDGRTGDPF 926
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_JASNU (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum GN=rpoB PE=3 SV=1) HSP 1 Score: 384.415 bits (986), Expect = 2.861e-106 Identity = 190/221 (85.97%), Postives = 203/221 (91.86%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNGIVMLGSWVETG ILVGKLTP+ KES P +RL+ I+ IQVST K+TCLKLPIGGRGRVIDVRW+QK+G + NPETI +YI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLL+RHYRI PFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGR+G+PF Sbjct: 714 LLRNLDKNGIVMLGSWVETGAILVGKLTPEVVKES---PANRLVYDIVGIQVSTSKDTCLKLPIGGRGRVIDVRWIQKRGDND-NPETIRIYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTTNPWVFEPEYPGKSRIFDGRSGNPF 930
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PELHO (DNA-directed RNA polymerase subunit beta OS=Pelargonium hortorum GN=rpoB PE=3 SV=1) HSP 1 Score: 368.237 bits (944), Expect = 2.122e-101 Identity = 180/221 (81.45%), Postives = 195/221 (88.24%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNG+V+LGSWVE GDILVGKLTP+ + S PE RL+ A+ D + T +++CLKLPI GRGRVIDVRW+ K S NPE I VYILQKR+IKVGDKVAGRHGNKGIVSKILP QDMPYLQDGRP+DMVFNPLGVPSRMNVGQIFECSLGLAGGLL+RHYRIAPFDERYE+EASRKLVFSELYEASKQT NPWVFEPEYPGKS IFDGRTGDPF Sbjct: 721 LLRNLDKNGVVILGSWVEAGDILVGKLTPELVELS---PEKRLIEALFDAPIGTTRQSCLKLPIWGRGRVIDVRWIHKGSASRSNPERIRVYILQKRKIKVGDKVAGRHGNKGIVSKILPIQDMPYLQDGRPLDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEEEASRKLVFSELYEASKQTGNPWVFEPEYPGKSIIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SORBI (DNA-directed RNA polymerase subunit beta OS=Sorghum bicolor GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SACOF (DNA-directed RNA polymerase subunit beta OS=Saccharum officinarum GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SACHY (DNA-directed RNA polymerase subunit beta OS=Saccharum hybrid GN=rpoB PE=2 SV=2) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSJ (DNA-directed RNA polymerase subunit beta OS=Oryza sativa subsp. japonica GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSI (DNA-directed RNA polymerase subunit beta OS=Oryza sativa subsp. indica GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYSA (DNA-directed RNA polymerase subunit beta OS=Oryza sativa GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941 The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bpback to top |