DR406026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYNI (DNA-directed RNA polymerase subunit beta OS=Oryza nivara GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_MAIZE (DNA-directed RNA polymerase subunit beta OS=Zea mays GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGAPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_HORVU (DNA-directed RNA polymerase subunit beta OS=Hordeum vulgare GN=rpoB PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101 Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 726 LLRNLDKNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_WHEAT (DNA-directed RNA polymerase subunit beta OS=Triticum aestivum GN=rpoB PE=3 SV=1) HSP 1 Score: 366.696 bits (940), Expect = 6.174e-101 Identity = 185/223 (82.96%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 726 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_AGRST (DNA-directed RNA polymerase subunit beta OS=Agrostis stolonifera GN=rpoB PE=3 SV=1) HSP 1 Score: 366.696 bits (940), Expect = 6.174e-101 Identity = 185/223 (82.96%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 726 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LOLPR (DNA-directed RNA polymerase subunit beta OS=Lolium perenne GN=rpoB PE=3 SV=1) HSP 1 Score: 364.385 bits (934), Expect = 3.064e-100 Identity = 184/223 (82.51%), Postives = 195/223 (87.44%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NG+V LGSWVET DILVGKLTPQ A ESSY E LLRAI ++VST KET LKLPIGGRGRVIDV+W+Q+ +P I V YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 726 LLRNLDRNGVVRLGSWVETSDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PINTH (DNA-directed RNA polymerase subunit beta OS=Pinus thunbergii GN=rpoB PE=3 SV=1) HSP 1 Score: 338.576 bits (867), Expect = 1.801e-92 Identity = 160/221 (72.40%), Postives = 188/221 (85.07%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLR+LD+NG+VMLGSW+ETGD+LVGKLTPQ +ES PE RLL+ I I+VST +E CL+ PIGGRGRVIDVRW+ + S N ET+ VYI QKR+I+VGDKV+GRHGNKGI+S +LPRQDMPYLQ+G PVDMV NPLGVPSRMNVGQIFEC GLAG +N+HYRI PFDE+YE+EASRKLVF ELY+AS+QTANPWVFEP++PGK R+ DGRTGD F Sbjct: 721 LLRHLDENGLVMLGSWIETGDVLVGKLTPQTIEESLCTPEGRLLQTIFGIEVSTARENCLRAPIGGRGRVIDVRWINRVDDSGDNAETVHVYISQKRKIQVGDKVSGRHGNKGIISIVLPRQDMPYLQNGIPVDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKASEQTANPWVFEPDHPGKHRLIDGRTGDVF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ANTFO (DNA-directed RNA polymerase subunit beta OS=Anthoceros formosae GN=rpoB PE=2 SV=1) HSP 1 Score: 338.576 bits (867), Expect = 1.801e-92 Identity = 162/221 (73.30%), Postives = 191/221 (86.43%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLR+LD++G+V+ GSWVETGD+LVGKLTPQ +ES APE +LL+AI IQV T KETCLK+P+GGRGRVID++W+ ++ S+ E + VYILQKREI+VGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMV +PLGVPSRMNVGQIFEC LGLAG L +HYR+ PFDERYE+EASRKLVFSEL+EAS+QTANPW+FE + PGKS + DGRTGD F Sbjct: 717 LLRHLDESGLVLPGSWVETGDVLVGKLTPQETEESLRAPEGKLLQAIFGIQVVTAKETCLKVPLGGRGRVIDIKWIYQEKTSTTYAEIVHVYILQKREIQVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVLSPLGVPSRMNVGQIFECLLGLAGDFLQKHYRVTPFDERYEREASRKLVFSELHEASRQTANPWLFESDNPGKSGLLDGRTGDIF 937
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PINKO (DNA-directed RNA polymerase subunit beta OS=Pinus koraiensis GN=rpoB PE=3 SV=1) HSP 1 Score: 337.806 bits (865), Expect = 3.071e-92 Identity = 160/220 (72.73%), Postives = 188/220 (85.45%), Query Frame = 2 Query: 11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LR+LD+NG+VMLGSW+ETGD+LVGKLTPQ +ES PE RLL+ I I+VST +E+CL+ PIGG+GRVIDVRW+ + S N ET+ VYI QKR+I+VGDKVAGRHGNKGI+S ILPRQDMPYLQ+G PVDMV NPLGVPSRMNVGQIFEC GLAG L+N+HYRI PFDE+YE+EASRKLVF ELY+AS+QTANPWVFEP++PGK R+ DGRTG F Sbjct: 722 LRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCTPEGRLLQTIFGIEVSTARESCLRAPIGGKGRVIDVRWINRVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIILPRQDMPYLQNGIPVDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTANPWVFEPDHPGKHRLIDGRTGAVF 941
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CYCTA (DNA-directed RNA polymerase subunit beta OS=Cycas taitungensis GN=rpoB PE=3 SV=1) HSP 1 Score: 337.806 bits (865), Expect = 3.071e-92 Identity = 165/219 (75.34%), Postives = 187/219 (85.39%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGD 664 LLR+LD NG+VMLGSWVETGD+LVGKLTPQ A+ES APE RLL+AI IQVS+ +E+CL++PIGGRGRVIDVRW+ K+ N E + VYI QKR+I+VGDKVAGR GNKGI+SKILPRQDMPYLQDG VDMV NPLGV SRMNVGQIFEC GLAG L+NRHYRI PFDERYE+EASRK VF ELY AS+QTANPWVFEP +PGK+R+ DGRTGD Sbjct: 718 LLRHLDGNGLVMLGSWVETGDVLVGKLTPQPAEESLRAPEGRLLQAIFGIQVSSARESCLRVPIGGRGRVIDVRWIHKEENFGDNAEVVHVYIFQKRKIQVGDKVAGRLGNKGIISKILPRQDMPYLQDGTSVDMVLNPLGVLSRMNVGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKPVFPELYGASEQTANPWVFEPNHPGKNRLIDGRTGD 936 The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bpback to top |