DR406026

Overview
NameDR406026
Unique NameDR406026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PSINU (DNA-directed RNA polymerase subunit beta OS=Psilotum nudum GN=rpoB PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.991e-91
Identity = 162/221 (73.30%), Postives = 191/221 (86.43%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            +LR+LD NG+V+LGSWVETGD+LVGKLTPQ  ++S  APE +LL+AI  IQV+  KE+CLK+PIGG+GRVID RWV K+     N +TI +YILQKR+I+VGDKVAGRHGNKGIVSKILPRQDMP+LQDG PVDM+ +PLGVPSRMNVGQIFEC LGLAG  + RHYRI PFDER+E+EASRKLVFSEL EAS++T NPW+FEP+YPGKSR+ DGRTGD F
Sbjct:  714 VLRHLDSNGLVVLGSWVETGDVLVGKLTPQ--EDSLRAPEGKLLQAIFGIQVADTKESCLKVPIGGQGRVIDARWVYKENILINNAKTIHIYILQKRKIRVGDKVAGRHGNKGIVSKILPRQDMPHLQDGTPVDMILSPLGVPSRMNVGQIFECLLGLAGDFMQRHYRITPFDERFEREASRKLVFSELCEASEKTRNPWLFEPDYPGKSRLIDGRTGDTF 932          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_MARPO (DNA-directed RNA polymerase subunit beta OS=Marchantia polymorpha GN=rpoB PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 9.880e-91
Identity = 156/221 (70.59%), Postives = 192/221 (86.88%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLR+LD+NGIV+ GSWVETGD+LVGKLTPQ  +E+  APE +LL+AI  IQV+T KETCLK+P GGRGRVID+R + ++  S+   + I +YILQKR+I++GDKVAGRHGNKGI+SKILPRQDMP+LQDG P+DM+ +PLGVPSRMNVGQIFEC LGLAG  L+++YRI PFDERYE+EASRKLVFSELY+ASK+T NPW+FEP+ PGK+R+ DGRTG+ F
Sbjct:  711 LLRHLDQNGIVLTGSWVETGDVLVGKLTPQETEENLRAPEGKLLQAIFGIQVATSKETCLKVPPGGRGRVIDIRLISQEDNSANTAQIIHIYILQKRKIQIGDKVAGRHGNKGIISKILPRQDMPFLQDGTPIDMILSPLGVPSRMNVGQIFECLLGLAGSFLHKNYRIIPFDERYEREASRKLVFSELYKASKKTTNPWLFEPDNPGKNRLIDGRTGEIF 931          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PHYPA (DNA-directed RNA polymerase subunit beta OS=Physcomitrella patens GN=rpoB PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.201e-90
Identity = 160/221 (72.40%), Postives = 188/221 (85.07%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            +LR+LDKNG+V+ GSWVETGD+LVGKLTPQ  +ES  APE +LL+AI  IQV+  KETCLK+P+ G+GRVIDV W+ KK  SS   + I VYI QKR+I+VGDKVAGRHGNKGI+SKILPRQDMPYLQDG P+DMV +PLGVPSRMNVGQIFEC LGLAG  L +HYRI PFDE+YE+EASRKLVFSELY+ASK+T N W+FEPE PGKSR+ +GRTG+ F
Sbjct:  731 VLRHLDKNGLVIPGSWVETGDVLVGKLTPQETEESLRAPEGKLLQAIFGIQVTNAKETCLKVPLNGKGRVIDVIWISKKENSSNYEKIIHVYIAQKRKIQVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPIDMVLSPLGVPSRMNVGQIFECLLGLAGYFLGKHYRITPFDEKYEREASRKLVFSELYKASKKTGNLWLFEPENPGKSRLLNGRTGEIF 951          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ADICA (DNA-directed RNA polymerase subunit beta OS=Adiantum capillus-veneris GN=rpoB PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.434e-89
Identity = 155/223 (69.51%), Postives = 186/223 (83.41%), Query Frame = 2
Query:    2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            G LLR+LD +G+V LGSWVE GD+LVGKLTPQ    SS  PE RLL+AI  IQ+   +E+CL++PIGGRGRVIDVRWV  +  ++ + E I +YILQ+R+I+VGDK+AGRHGNKGIVSKI+PRQDMPYLQ+G PVDM+ +PLGVPSRMNVGQIFEC LGLAG  L  HYR+ PFDERYE+EASRKLVF+EL+EA  +T NPW+FEP +PGKSR+ DGRTGDPF
Sbjct:  715 GYLLRHLDDDGLVELGSWVEAGDVLVGKLTPQEGASSSRVPEGRLLQAIFGIQLVNARESCLRVPIGGRGRVIDVRWVYPEDDATNDLEVIHIYILQRRKIQVGDKIAGRHGNKGIVSKIVPRQDMPYLQNGTPVDMILSPLGVPSRMNVGQIFECLLGLAGEFLETHYRVVPFDERYEREASRKLVFAELHEAGARTNNPWLFEPSHPGKSRLIDGRTGDPF 937          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ANGEV (DNA-directed RNA polymerase subunit beta OS=Angiopteris evecta GN=rpoB PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.178e-89
Identity = 157/221 (71.04%), Postives = 187/221 (84.62%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            +LR+LD NG+V+ GSWVETGD+LVGKLTPQ A+ S   PE +LL+AI  IQ++  +E+CLK+PIGGRGRVIDVRW+  +         + VYILQKR+I+VGDKVAGRHGNKGIVSKILPRQDMPYLQDG PVDM+ +PLGVPSRMNVGQIFEC LGLAG +L +HYRI PFDERYE+EASRKLVFSEL+EAS++ A PW+FEP++PGKSR+ DGRTGD F
Sbjct:  716 VLRHLDNNGLVVPGSWVETGDVLVGKLTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYDEDTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMILSPLGVPSRMNVGQIFECLLGLAGDILKKHYRITPFDERYEREASRKLVFSELHEASQEAAIPWLFEPDHPGKSRLIDGRTGDIF 936          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_HUPLU (DNA-directed RNA polymerase subunit beta OS=Huperzia lucidula GN=rpoB PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.251e-84
Identity = 150/220 (68.18%), Postives = 181/220 (82.27%), Query Frame = 2
Query:   11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LR+LD+NG+V+ GSWVETGD++VGKLTP+  +ES   PE  LL+AI  I ++  +ETCLK+P GG+G+VIDVR V  +  + Y    I VYILQKREIKVGDKVAGRHGNKGI+SKILPR+DMPYLQDG P++M+ +PLGVPSRMNVGQIFEC LGLAGG L RHYR+ PFDERYE+EASRKLVFSEL +A +QT NPW+FE + PGKS + DGRTG+ F
Sbjct:  729 LRHLDENGLVLPGSWVETGDVIVGKLTPRDPEESLKIPEGNLLQAIFGIDITATRETCLKVPPGGKGQVIDVRSVYPEDDNQYR-NFIYVYILQKREIKVGDKVAGRHGNKGIISKILPREDMPYLQDGTPIEMILSPLGVPSRMNVGQIFECLLGLAGGFLKRHYRVIPFDERYEREASRKLVFSELNKAGEQTTNPWLFELDNPGKSLLIDGRTGEIF 947          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_STAPU (DNA-directed RNA polymerase subunit beta OS=Staurastrum punctulatum GN=rpoB PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.528e-83
Identity = 147/221 (66.52%), Postives = 180/221 (81.45%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLR+LD  GI+ +G+WVE GD+LVGKL P  A     +PE +LL+AI  +Q  T +E+CLKLP GG GRVIDVRW++++G S  +  ++ VYILQKR+I+VGDKVAGRHGNKG+VS+ILPR+DMPY+QDG P+DMV +PLGVPSRMNVGQ+FEC LGLAG  LN HYRI PFDER+E+EASRKLVFSELY+A K T  PW+FEP  PGKS +FDGRTG+ F
Sbjct:  716 LLRHLDYRGIIKIGAWVEPGDVLVGKLAPLEAPHLLRSPEGKLLQAIFGVQAITTRESCLKLPAGGTGRVIDVRWIEQQGPSGVS--SLHVYILQKRKIQVGDKVAGRHGNKGVVSRILPREDMPYMQDGTPIDMVLSPLGVPSRMNVGQLFECLLGLAGSYLNNHYRIMPFDERFEREASRKLVFSELYKARKFTGYPWLFEPNSPGKSSLFDGRTGEIF 934          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ZYGCR (DNA-directed RNA polymerase subunit beta OS=Zygnema circumcarinatum GN=rpoB PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.995e-83
Identity = 146/221 (66.06%), Postives = 182/221 (82.35%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            +LR+LD+ G+V LG+WVETGD+LVGKLT + ++   + PE +LL+ IL +Q    ++TCLK+P  G GRVIDVRW+ +      + + I VYILQ+R+I+VGDKVAGRHGNKG+VS+ILPRQDMPYLQDG PVDMV +PLGVPSRMNVGQ+FEC LGLAGG LN+HYRI PFDERY +E+SRKLVFSELY+AS+ T  PW+FEP+ PGKSR+FDGRTG+ F
Sbjct:  707 VLRHLDETGVVSLGAWVETGDVLVGKLTAKQSEGLLHTPESKLLQDILGVQAFGTQDTCLKVPTRGEGRVIDVRWITRDNHLLGHRKVIHVYILQERKIQVGDKVAGRHGNKGVVSRILPRQDMPYLQDGTPVDMVLSPLGVPSRMNVGQVFECLLGLAGGYLNQHYRIMPFDERYGRESSRKLVFSELYKASQTTNYPWIFEPDSPGKSRLFDGRTGEVF 927          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CHAVU (DNA-directed RNA polymerase subunit beta OS=Chara vulgaris GN=rpoB PE=3 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.095e-81
Identity = 145/222 (65.32%), Postives = 179/222 (80.63%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNP-ETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD NG+++LGSWV+TGD+LVGKLTP+   ES   PE RLL AI  I+ S+  ETCLK+  G  GRVIDVRWV+     +    +T+ +YILQKR+I+VGDK+AGRHGNKG++S+ILPR+DMPY+QDG P+DMV +PLGVPSRMN+GQIFEC LGLAG  L +HYRI PFDER+E+EASRKL FSELY+A K T + W+FEP+ PGKS++FDGRTG  F
Sbjct:  719 LLRNLDVNGLILLGSWVKTGDVLVGKLTPREPGESLRLPEGRLLHAIFGIKASSFFETCLKVAPGAEGRVIDVRWVESANKLTQKYIKTVNIYILQKRKIQVGDKIAGRHGNKGVISRILPREDMPYIQDGTPIDMVLSPLGVPSRMNLGQIFECLLGLAGESLKKHYRIMPFDERHEREASRKLAFSELYQAKKFTGHSWLFEPDTPGKSQLFDGRTGQTF 940          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CHAGL (DNA-directed RNA polymerase subunit beta OS=Chaetosphaeridium globosum GN=rpoB PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 9.592e-78
Identity = 137/220 (62.27%), Postives = 172/220 (78.18%), Query Frame = 2
Query:   11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LR+LD+NG+V LGSWVE GD+L+GKL+ Q  ++S   PE +LL+AI  +Q+   ++T LKLP GG GRVID++W+ +  G   +   + VY+LQKR I+VGDK+AGRHGNKGIVS+IL R DMPYLQ+G  +DMV +PLGVPSRMNVGQI EC LG AG  LN++YRI PFDERYE+EASRKLV SEL++A K T  PW+ EPE  GKSR+FDGRTG+ F
Sbjct:  717 LRHLDENGLVTLGSWVEAGDVLIGKLSSQEREDSLKVPEGKLLQAIFGLQIGNSRDTSLKLPAGGEGRVIDIQWIFQDEGGIDSNNFVNVYVLQKRRIQVGDKIAGRHGNKGIVSQILSRHDMPYLQNGTSIDMVLSPLGVPSRMNVGQILECLLGFAGKFLNKNYRITPFDERYEREASRKLVLSELHKAKKLTGYPWLLEPENAGKSRLFDGRTGETF 936          
The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOB_PSINU1.991e-9173.30DNA-directed RNA polymerase subunit beta OS=Psilot... [more]
RPOB_MARPO9.880e-9170.59DNA-directed RNA polymerase subunit beta OS=Marcha... [more]
RPOB_PHYPA2.201e-9072.40DNA-directed RNA polymerase subunit beta OS=Physco... [more]
RPOB_ADICA2.434e-8969.51DNA-directed RNA polymerase subunit beta OS=Adiant... [more]
RPOB_ANGEV3.178e-8971.04DNA-directed RNA polymerase subunit beta OS=Angiop... [more]
RPOB_HUPLU5.251e-8468.18DNA-directed RNA polymerase subunit beta OS=Huperz... [more]
RPOB_STAPU1.528e-8366.52DNA-directed RNA polymerase subunit beta OS=Staura... [more]
RPOB_ZYGCR1.995e-8366.06DNA-directed RNA polymerase subunit beta OS=Zygnem... [more]
RPOB_CHAVU1.095e-8165.32DNA-directed RNA polymerase subunit beta OS=Chara ... [more]
RPOB_CHAGL9.592e-7862.27DNA-directed RNA polymerase subunit beta OS=Chaeto... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H24 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bp
GGGCCGGTTACTCCGCAATTTAGACAAAAATGGAATTGTGATGCTGGGAT
CTTGGGTAGAGACCGGCGATATTTTAGTAGGTAAATTAACGCCTCAGGCG
GCGAAAGAATCATCGTATGCTCCGGAAGATAGATTATTACGGGCCATACT
TGACATTCAGGTATCCACTCCAAAGGAAACTTGCCTAAAACTACCTATAG
GTGGTAGGGGTCGCGTTATTGATGTGAGATGGGTCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTTGTGTATATATTTTACAGAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTGCCTAGACAGGATATGCCTTATTTGCAAGATGGAAGG
CCTGTTGATATGGTTTTCAACCCACTAGGAGTACCCTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCGCTCGGGTTAGCGGGGGGTCTGCTAAATC
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCG
AGAAAACTCGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACCGCGAA
TCCATGGGTATTTGAGCCGGAATACCCGGGAAAAAGCAGAATATTTGATG
GACGAACGGGAGATCCTTTTG
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