DR406026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PSINU (DNA-directed RNA polymerase subunit beta OS=Psilotum nudum GN=rpoB PE=3 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 1.991e-91 Identity = 162/221 (73.30%), Postives = 191/221 (86.43%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 +LR+LD NG+V+LGSWVETGD+LVGKLTPQ ++S APE +LL+AI IQV+ KE+CLK+PIGG+GRVID RWV K+ N +TI +YILQKR+I+VGDKVAGRHGNKGIVSKILPRQDMP+LQDG PVDM+ +PLGVPSRMNVGQIFEC LGLAG + RHYRI PFDER+E+EASRKLVFSEL EAS++T NPW+FEP+YPGKSR+ DGRTGD F Sbjct: 714 VLRHLDSNGLVVLGSWVETGDVLVGKLTPQ--EDSLRAPEGKLLQAIFGIQVADTKESCLKVPIGGQGRVIDARWVYKENILINNAKTIHIYILQKRKIRVGDKVAGRHGNKGIVSKILPRQDMPHLQDGTPVDMILSPLGVPSRMNVGQIFECLLGLAGDFMQRHYRITPFDERFEREASRKLVFSELCEASEKTRNPWLFEPDYPGKSRLIDGRTGDTF 932
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_MARPO (DNA-directed RNA polymerase subunit beta OS=Marchantia polymorpha GN=rpoB PE=3 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 9.880e-91 Identity = 156/221 (70.59%), Postives = 192/221 (86.88%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLR+LD+NGIV+ GSWVETGD+LVGKLTPQ +E+ APE +LL+AI IQV+T KETCLK+P GGRGRVID+R + ++ S+ + I +YILQKR+I++GDKVAGRHGNKGI+SKILPRQDMP+LQDG P+DM+ +PLGVPSRMNVGQIFEC LGLAG L+++YRI PFDERYE+EASRKLVFSELY+ASK+T NPW+FEP+ PGK+R+ DGRTG+ F Sbjct: 711 LLRHLDQNGIVLTGSWVETGDVLVGKLTPQETEENLRAPEGKLLQAIFGIQVATSKETCLKVPPGGRGRVIDIRLISQEDNSANTAQIIHIYILQKRKIQIGDKVAGRHGNKGIISKILPRQDMPFLQDGTPIDMILSPLGVPSRMNVGQIFECLLGLAGSFLHKNYRIIPFDERYEREASRKLVFSELYKASKKTTNPWLFEPDNPGKNRLIDGRTGEIF 931
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PHYPA (DNA-directed RNA polymerase subunit beta OS=Physcomitrella patens GN=rpoB PE=3 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 2.201e-90 Identity = 160/221 (72.40%), Postives = 188/221 (85.07%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 +LR+LDKNG+V+ GSWVETGD+LVGKLTPQ +ES APE +LL+AI IQV+ KETCLK+P+ G+GRVIDV W+ KK SS + I VYI QKR+I+VGDKVAGRHGNKGI+SKILPRQDMPYLQDG P+DMV +PLGVPSRMNVGQIFEC LGLAG L +HYRI PFDE+YE+EASRKLVFSELY+ASK+T N W+FEPE PGKSR+ +GRTG+ F Sbjct: 731 VLRHLDKNGLVIPGSWVETGDVLVGKLTPQETEESLRAPEGKLLQAIFGIQVTNAKETCLKVPLNGKGRVIDVIWISKKENSSNYEKIIHVYIAQKRKIQVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPIDMVLSPLGVPSRMNVGQIFECLLGLAGYFLGKHYRITPFDEKYEREASRKLVFSELYKASKKTGNLWLFEPENPGKSRLLNGRTGEIF 951
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ADICA (DNA-directed RNA polymerase subunit beta OS=Adiantum capillus-veneris GN=rpoB PE=2 SV=2) HSP 1 Score: 328.176 bits (840), Expect = 2.434e-89 Identity = 155/223 (69.51%), Postives = 186/223 (83.41%), Query Frame = 2 Query: 2 GRLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 G LLR+LD +G+V LGSWVE GD+LVGKLTPQ SS PE RLL+AI IQ+ +E+CL++PIGGRGRVIDVRWV + ++ + E I +YILQ+R+I+VGDK+AGRHGNKGIVSKI+PRQDMPYLQ+G PVDM+ +PLGVPSRMNVGQIFEC LGLAG L HYR+ PFDERYE+EASRKLVF+EL+EA +T NPW+FEP +PGKSR+ DGRTGDPF Sbjct: 715 GYLLRHLDDDGLVELGSWVEAGDVLVGKLTPQEGASSSRVPEGRLLQAIFGIQLVNARESCLRVPIGGRGRVIDVRWVYPEDDATNDLEVIHIYILQRRKIQVGDKIAGRHGNKGIVSKIVPRQDMPYLQNGTPVDMILSPLGVPSRMNVGQIFECLLGLAGEFLETHYRVVPFDERYEREASRKLVFAELHEAGARTNNPWLFEPSHPGKSRLIDGRTGDPF 937
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ANGEV (DNA-directed RNA polymerase subunit beta OS=Angiopteris evecta GN=rpoB PE=3 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 3.178e-89 Identity = 157/221 (71.04%), Postives = 187/221 (84.62%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 +LR+LD NG+V+ GSWVETGD+LVGKLTPQ A+ S PE +LL+AI IQ++ +E+CLK+PIGGRGRVIDVRW+ + + VYILQKR+I+VGDKVAGRHGNKGIVSKILPRQDMPYLQDG PVDM+ +PLGVPSRMNVGQIFEC LGLAG +L +HYRI PFDERYE+EASRKLVFSEL+EAS++ A PW+FEP++PGKSR+ DGRTGD F Sbjct: 716 VLRHLDNNGLVVPGSWVETGDVLVGKLTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYDEDTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMILSPLGVPSRMNVGQIFECLLGLAGDILKKHYRITPFDERYEREASRKLVFSELHEASQEAAIPWLFEPDHPGKSRLIDGRTGDIF 936
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_HUPLU (DNA-directed RNA polymerase subunit beta OS=Huperzia lucidula GN=rpoB PE=3 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 5.251e-84 Identity = 150/220 (68.18%), Postives = 181/220 (82.27%), Query Frame = 2 Query: 11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LR+LD+NG+V+ GSWVETGD++VGKLTP+ +ES PE LL+AI I ++ +ETCLK+P GG+G+VIDVR V + + Y I VYILQKREIKVGDKVAGRHGNKGI+SKILPR+DMPYLQDG P++M+ +PLGVPSRMNVGQIFEC LGLAGG L RHYR+ PFDERYE+EASRKLVFSEL +A +QT NPW+FE + PGKS + DGRTG+ F Sbjct: 729 LRHLDENGLVLPGSWVETGDVIVGKLTPRDPEESLKIPEGNLLQAIFGIDITATRETCLKVPPGGKGQVIDVRSVYPEDDNQYR-NFIYVYILQKREIKVGDKVAGRHGNKGIISKILPREDMPYLQDGTPIEMILSPLGVPSRMNVGQIFECLLGLAGGFLKRHYRVIPFDERYEREASRKLVFSELNKAGEQTTNPWLFELDNPGKSLLIDGRTGEIF 947
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_STAPU (DNA-directed RNA polymerase subunit beta OS=Staurastrum punctulatum GN=rpoB PE=3 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 1.528e-83 Identity = 147/221 (66.52%), Postives = 180/221 (81.45%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLR+LD GI+ +G+WVE GD+LVGKL P A +PE +LL+AI +Q T +E+CLKLP GG GRVIDVRW++++G S + ++ VYILQKR+I+VGDKVAGRHGNKG+VS+ILPR+DMPY+QDG P+DMV +PLGVPSRMNVGQ+FEC LGLAG LN HYRI PFDER+E+EASRKLVFSELY+A K T PW+FEP PGKS +FDGRTG+ F Sbjct: 716 LLRHLDYRGIIKIGAWVEPGDVLVGKLAPLEAPHLLRSPEGKLLQAIFGVQAITTRESCLKLPAGGTGRVIDVRWIEQQGPSGVS--SLHVYILQKRKIQVGDKVAGRHGNKGVVSRILPREDMPYMQDGTPIDMVLSPLGVPSRMNVGQLFECLLGLAGSYLNNHYRIMPFDERFEREASRKLVFSELYKARKFTGYPWLFEPNSPGKSSLFDGRTGEIF 934
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ZYGCR (DNA-directed RNA polymerase subunit beta OS=Zygnema circumcarinatum GN=rpoB PE=3 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 1.995e-83 Identity = 146/221 (66.06%), Postives = 182/221 (82.35%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 +LR+LD+ G+V LG+WVETGD+LVGKLT + ++ + PE +LL+ IL +Q ++TCLK+P G GRVIDVRW+ + + + I VYILQ+R+I+VGDKVAGRHGNKG+VS+ILPRQDMPYLQDG PVDMV +PLGVPSRMNVGQ+FEC LGLAGG LN+HYRI PFDERY +E+SRKLVFSELY+AS+ T PW+FEP+ PGKSR+FDGRTG+ F Sbjct: 707 VLRHLDETGVVSLGAWVETGDVLVGKLTAKQSEGLLHTPESKLLQDILGVQAFGTQDTCLKVPTRGEGRVIDVRWITRDNHLLGHRKVIHVYILQERKIQVGDKVAGRHGNKGVVSRILPRQDMPYLQDGTPVDMVLSPLGVPSRMNVGQVFECLLGLAGGYLNQHYRIMPFDERYGRESSRKLVFSELYKASQTTNYPWIFEPDSPGKSRLFDGRTGEVF 927
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CHAVU (DNA-directed RNA polymerase subunit beta OS=Chara vulgaris GN=rpoB PE=3 SV=2) HSP 1 Score: 302.753 bits (774), Expect = 1.095e-81 Identity = 145/222 (65.32%), Postives = 179/222 (80.63%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNP-ETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD NG+++LGSWV+TGD+LVGKLTP+ ES PE RLL AI I+ S+ ETCLK+ G GRVIDVRWV+ + +T+ +YILQKR+I+VGDK+AGRHGNKG++S+ILPR+DMPY+QDG P+DMV +PLGVPSRMN+GQIFEC LGLAG L +HYRI PFDER+E+EASRKL FSELY+A K T + W+FEP+ PGKS++FDGRTG F Sbjct: 719 LLRNLDVNGLILLGSWVKTGDVLVGKLTPREPGESLRLPEGRLLHAIFGIKASSFFETCLKVAPGAEGRVIDVRWVESANKLTQKYIKTVNIYILQKRKIQVGDKIAGRHGNKGVISRILPREDMPYIQDGTPIDMVLSPLGVPSRMNLGQIFECLLGLAGESLKKHYRIMPFDERHEREASRKLAFSELYQAKKFTGHSWLFEPDTPGKSQLFDGRTGQTF 940
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CHAGL (DNA-directed RNA polymerase subunit beta OS=Chaetosphaeridium globosum GN=rpoB PE=3 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 9.592e-78 Identity = 137/220 (62.27%), Postives = 172/220 (78.18%), Query Frame = 2 Query: 11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LR+LD+NG+V LGSWVE GD+L+GKL+ Q ++S PE +LL+AI +Q+ ++T LKLP GG GRVID++W+ + G + + VY+LQKR I+VGDK+AGRHGNKGIVS+IL R DMPYLQ+G +DMV +PLGVPSRMNVGQI EC LG AG LN++YRI PFDERYE+EASRKLV SEL++A K T PW+ EPE GKSR+FDGRTG+ F Sbjct: 717 LRHLDENGLVTLGSWVEAGDVLIGKLSSQEREDSLKVPEGKLLQAIFGLQIGNSRDTSLKLPAGGEGRVIDIQWIFQDEGGIDSNNFVNVYVLQKRRIQVGDKIAGRHGNKGIVSQILSRHDMPYLQNGTSIDMVLSPLGVPSRMNVGQILECLLGFAGKFLNKNYRITPFDERYEREASRKLVLSELHKAKKLTGYPWLLEPENAGKSRLFDGRTGETF 936 The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bpback to top |