DR406020

Overview
NameDR406020
Unique NameDR406020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5704 contig Csv1_Contig5704:54..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 70/236 (29.66%), Postives = 99/236 (41.95%), Query Frame = 1
Query:   22 PSSLD----WRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISL--SEQELVDCDTTSYG--CDGGYMDYAFE-WV---INNGGIDTE------------------SDYPYTGVDGT--CNITKEETKVVSID-----GYKDVEPSDSA--LLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITR 612
            P S D    W     +  ++DQGSCGSCW+F    A+     + T   +++  S ++L+ C     G  C+GGY   A+  W    + +GG+                     S  P TG   T  CN   E     S       GY     SDS   ++    +     G     SDF  Y SG+Y  +  +      HA+ I+G+G ENG  YW+V NSW   WG +G+F I R
Sbjct:   81 PESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGD--VMGGHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILR 314          
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CATZ_HUMAN (Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 70/228 (30.70%), Postives = 97/228 (42.54%), Query Frame = 1
Query:   16 EAPSSLDWRK------RGIVTPVKDQGSCGSCWSFSTTGAI-EGINALVTGDLIS--LSEQELVDCDTTSYGCDGG----YMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKEETKVVS-----IDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDT 618
            + P S DWR         I         CGSCW+ ++T A+ + IN    G   S  LS Q ++DC      C+GG      DYA +      GI  E+   Y   D         GTCN  KE   + +     +  Y  +   +  +       PIS G++ +      YT GIY      D  YI+H V + G+G  +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   61 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAG-SCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYTGGIYAE--YQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 279          
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CATZ_BOVIN (Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 68/224 (30.36%), Postives = 101/224 (45.09%), Query Frame = 1
Query:   16 EAPSSLDWRK-RGI--VTPVKDQGS---CGSCWSFSTTGAI-EGINALVTGDLIS--LSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKE-----ETKVVSIDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENGEDYWIVKNSWGTSWGIDGYFYITRDT 618
            + P S DWR   G+   +  ++Q     CGSCW+  +T A+ + IN    G   S  LS Q ++DC      C+GG     +E+  +  GI  E+   Y   D         GTC   KE        +  +  Y  +   +  +       PIS G++ +      YT GIY+    ND  +I+H V + G+G  +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   62 DLPKSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGDAG-SCEGGNDLPVWEYA-HRHGIPDETCNNYQAKDQECDKFNQCGTCTEFKECHVIKNYTLWKVGDYGSLSGREKMMAEIYTNGPISCGIMATEK-MSNYTGGIYSE--YNDQAFINHIVSVAGWGVSDGMEYWIVRNSWGEPWGEHGWMRIVTST 280          
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CATZ_MOUSE (Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 66/225 (29.33%), Postives = 100/225 (44.44%), Query Frame = 1
Query:   16 EAPSSLDWRK-RGI--VTPVKDQGS---CGSCWSFSTTGAI-EGINALVTG--DLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKEETKVVS-----IDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG-SENGEDYWIVKNSWGTSWGIDGYFYITRDT 618
            + P + DWR   G+   +  ++Q     CGSCW+  +T A+ + IN    G    I LS Q ++DC      C+GG     +E+  +  GI  E+   Y   D         GTC   KE   + +     +  Y  +   +  +       PIS G++ +      YT GIY      D   I+H + + G+G S +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   63 DLPKNWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSILLSVQNVIDCGNAG-SCEGGNDLPVWEYA-HKHGIPDETCNNYQAKDQDCDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATEM-MSNYTGGIYAEH--QDQAVINHIISVAGWGVSNDGIEYWIVRNSWGEPWGEKGWMRIVTST 282          
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CATZ_RAT (Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 65/225 (28.89%), Postives = 100/225 (44.44%), Query Frame = 1
Query:   16 EAPSSLDWRK-RGI--VTPVKDQGS---CGSCWSFSTTGAI-EGINALVTGDLIS--LSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVD---------GTCNITKEETKVVS-----IDGYKDVEPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYG-SENGEDYWIVKNSWGTSWGIDGYFYITRDT 618
            + P + DWR   G+   +  ++Q     CGSCW+  +T A+ + IN    G   S  LS Q ++DC      C+GG     +E+  +  GI  E+   Y   D         GTC   KE   + +     +  Y  +   +  +       PIS G++ +      YT GIY      +   I+H + + G+G S +G +YWIV+NSWG  WG  G+  I   T
Sbjct:   63 DLPKNWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSALADRINIKRKGAWPSTLLSVQNVIDCGNAG-SCEGGNDLPVWEYA-HKHGIPDETCNNYQAKDQECDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-MSNYTGGIYTE--YQNQAIINHIISVAGWGVSNDGIEYWIVRNSWGEPWGERGWMRIVTST 282          
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CYSP3_CARCN (Cysteine proteinase 3 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   22 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG 147
            P S+DWRK+G VTPVK+QGSCGSCW+FST   +EGIN +V G
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIATVEGINKIVHG 43          
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   22 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG 147
            P S+DWRK+G VTPVK+QGSCGSCW+FST   +EGIN + TG
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRTG 43          
BLAST of DR406020 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   22 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG 147
            P S+DWR++G VTPVKDQ  CGSCW+FST   +EGIN +VTG
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVTG 43          
The following BLAST results are available for this feature:
BLAST of DR406020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
CATB_RAT3.208e-1629.66Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATZ_HUMAN1.592e-1530.70Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1[more]
CATZ_BOVIN1.592e-1530.36Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2[more]
CATZ_MOUSE4.336e-1329.33Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1[more]
CATZ_RAT2.152e-1228.89Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2[more]
CYSP3_CARCN3.671e-1269.05Cysteine proteinase 3 (Fragment) OS=Carica candama... [more]
CYSP4_CARCN8.178e-1269.05Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN8.178e-1266.67Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H16 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406020 ID=DR406020; Name=DR406020; organism=Citrus sinensis; type=EST; length=731bp
GGGGTACAATCATGCGAAGCACCATCGAGCTTGGATTGGAGGAAAAGGGG
AATCGTTACTCCTGTTAAGGACCAAGGAAGCTGTGGAAGTTGTTGGTCGT
TCTCTACGACTGGAGCCATTGAAGGAATAAATGCCTTGGTCACTGGAGAC
CTCATTAGCCTTTCGGAACAAGAACTCGTGGATTGTGATACCACAAGCTA
TGGATGTGATGGAGGCTACATGGACTATGCATTTGAATGGGTTATTAACA
ACGGTGGAATCGACACAGAATCTGATTATCCTTACACTGGTGTCGATGGT
ACCTGCAATATCACCAAGGAGGAAACCAAAGTTGTATCTATTGATGGTTA
TAAAGATGTAGAGCCATCCGATAGTGCACTGCTATGTGCTGCAGTTCAAC
AACCGATTAGCGTTGGCATGGTTGGCTCTGCAAGTGATTTTCAGCTATAT
ACAAGTGGAATTTACAATGGTGACTGTTCCAACGACCCATATTACATTGA
TCATGCGGTTTTGATAGTTGGTTATGGCTCTGAAAATGGTGAAGATTATT
GGATTGTAAAGAATTCTTGGGGAACAAGTTGGGGAATTGACGGATACTTT
TACATAACAAGGGACACCAGTTTAGAATATGGTAAATGTGCCATCAATGC
TATGGCTTCTTATCCAATCGAAGAATCCTATGCACCATCTCCCTATTCAC
CACCATCCGAGCCACCCCCGCTACCGTCACC
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