DR406002

Overview
NameDR406002
Unique NameDR406002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: CABP8_RAT (Calcium-binding protein 8 OS=Rattus norvegicus GN=Caln1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 41/138 (29.71%), Postives = 82/138 (59.42%), Query Frame = 3
Query:    3 GNGRRKMADQLTDDQTSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMI 398
            G+   ++A+ ++ ++  E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++  +D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   ++  EL+H++ +   + LT ++++ +I
Sbjct:   24 GSDSEQLAN-ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---VTLEELKHILYHAFRDHLTMKDIENII 157          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: CABP8_MOUSE (Calcium-binding protein 8 OS=Mus musculus GN=Caln1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 41/138 (29.71%), Postives = 82/138 (59.42%), Query Frame = 3
Query:    3 GNGRRKMADQLTDDQTSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMI 398
            G+   ++A+ ++ ++  E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++  +D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   ++  EL+H++ +   + LT ++++ +I
Sbjct:   24 GSDSEQLAN-ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---VTLEELKHILYHAFRDHLTMKDIENII 157          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: CAVP_BRAFL (Calcium vector protein OS=Branchiostoma floridae PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 45/147 (30.61%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   24 ADQLTDDQTSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF-PEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            A  L  ++  E  + F +FD++ +      +   ++  LGQ  T+ E + ++ E         +  PE   ++  K    D EEE+  AF+VFD + +G I   E + +M  +GE+ LTD EV+E ++EAD DG+G I+  EF+ ++
Sbjct:    6 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNLGPEEWLVLCSKWVRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 152          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: ALLB3_BETVE (Calcium-binding allergen Bet v 3 OS=Betula verrucosa GN=BETVIII PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 3
Query:   48 TSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT----------DSEEELKEA------------FRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            T   +  F LFDK+ DG IT  EL   +  LG     +EL+  +     +GN  + F +F++L  + + D+          D+EE+++++            F+VFD+D +G+ISA EL+ V+  LG  E    + V++MI   D + DG++++ EF  +M
Sbjct:   38 TLRLRRIFDLFDKNSDGIITVDELSRALNLLGLETDLSELESTVKSFTREGNIGLQFEDFISL-HQSLNDSYFAYGGEDEDDNEEDMRKSILSQEEADSFGGFKVFDEDGDGYISARELQMVLGKLGFSEGSEIDRVEKMIVSVDSNRDGRVDFFEFKDMM 197          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 40/142 (28.17%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   39 DDQTSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELK--EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            +++  + +  F+  D + DG I+ +EL    ++LG+  ++ E +  +   D DG+G +D  EF  L+    + T+ E++ K  EAFR++  D    I+   L+ ++  LGE  T ++   MI+  D++ DG ++++EF  +M
Sbjct:   17 EEKNRDLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGNDEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLGESRTTDDCKVMIQAFDLNADGVLSFDEFALMM 158          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: CAVP_BRALA (Calcium vector protein OS=Branchiostoma lanceolatum PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 46/148 (31.08%), Postives = 81/148 (54.73%), Query Frame = 3
Query:   24 ADQLTDDQTSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG--TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            A  L  ++  E  + F +FD++ +      +   ++  LGQ  T+ E + ++ E          I   E+L L ++ ++  D EEE+  AF+VFD + +G I   E + +M  +GE+ LTD EV+E ++EAD DG+G I+  EF+ ++
Sbjct:    6 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPEEWLTLCSKWVRQ-DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 152          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: MLRS_CHICK (Myosin regulatory light chain 2, skeletal muscle isoform OS=Gallus gallus GN=MYLPF PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 46/151 (30.46%), Postives = 72/151 (47.68%), Query Frame = 3
Query:    9 GRRKMADQLTDDQTSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            G   +       Q  EFKEAF++ D++ DG I   +L     ++G+ N    EL  MI E     +G I+F  FL +   K+K  D E+ +  AF+V D D  G I  + L  ++T   ++ T EE+  M      D  G ++Y+    V+
Sbjct:   13 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI 159          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: MLR2_CAEEL (Myosin regulatory light chain 2 OS=Caenorhabditis elegans GN=mlc-2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 46/146 (31.51%), Postives = 74/146 (50.68%), Query Frame = 3
Query:   24 ADQLTDDQTSEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            A Q       EFKEAF + D++ DG I   +L  +  S+GQ   ++++  MI E     +G I+F  FL L   ++  TD E  +  AF +FDK   G I   +L  ++ N  GE L ++EV  M +       G+++Y+ F  ++
Sbjct:   18 AAQFDQKTIQEFKEAFGIMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKE----ASGPINFTVFLTLFGERLTGTDPEATIVGAFAMFDKKDCGKIKEDDLIKILQNKRGEPLDEDEVKAMYKGKPPIEGGEVDYKAFAHLI 159          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: CML43_ARATH (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 3
Query:   69 FSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK----------DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            F LFDK+ DG IT +EL   +  LG +   ++L+  ++         + F +F  L     +          D   E +L+EAF VFD+D +GFISA EL+ V+  LG  E    E+V++MI   D + DG++++ EF  +M
Sbjct:   33 FDLFDKNNDGFITVEELSQALSRLGLDADFSDLKSTVDSFIKPDKTGLRFDDFAALHKTLDESFFGGEGSCCDGSPESDLEEAFNVFDEDGDGFISAVELQKVLKKLGLPEAGEIEQVEKMIVSVDSNHDGRVDFFEFKNMM 174          
BLAST of DR406002 vs. ExPASy Swiss-Prot
Match: CML32_ORYSJ (Probable calcium-binding protein CML32 OS=Oryza sativa subsp. japonica GN=CML32 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   60 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT-------------------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 458
            +  F LFD++GDG IT  EL   + +LG       L   ++    +G   + F +F + + R + D                    D EEE++EAF+VFD D +GFISA+EL+ V+  LG  E  +   V EMI   D + DG++++ EF  +M
Sbjct:   36 RRVFDLFDRNGDGEITVDELAQALDALGLVADRDGLAATVSAYVPEGAAGLRFEDF-DALHRALGDALFGSLDGAAAAGEPGGGGGDEEEEMREAFKVFDVDGDGFISASELQEVLKKLGLPEAGSLATVREMICNVDRNSDGRVDFGEFKSMM 188          
The following BLAST results are available for this feature:
BLAST of DR406002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 480
Match NameE-valueIdentityDescription
CABP8_RAT1.433e-1329.71Calcium-binding protein 8 OS=Rattus norvegicus GN=... [more]
CABP8_MOUSE1.433e-1329.71Calcium-binding protein 8 OS=Mus musculus GN=Caln1... [more]
CAVP_BRAFL2.444e-1330.61Calcium vector protein OS=Branchiostoma floridae P... [more]
ALLB3_BETVE2.444e-1330.43Calcium-binding allergen Bet v 3 OS=Betula verruco... [more]
CML39_ARATH3.192e-1328.17Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
CAVP_BRALA3.192e-1331.08Calcium vector protein OS=Branchiostoma lanceolatu... [more]
MLRS_CHICK4.168e-1330.46Myosin regulatory light chain 2, skeletal muscle i... [more]
MLR2_CAEEL4.168e-1331.51Myosin regulatory light chain 2 OS=Caenorhabditis ... [more]
CML43_ARATH4.168e-1333.80Probable calcium-binding protein CML43 OS=Arabidop... [more]
CML32_ORYSJ4.168e-1333.12Probable calcium-binding protein CML32 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G21 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406002 ID=DR406002; Name=DR406002; organism=Citrus sinensis; type=EST; length=718bp
GGGGAAACGGAAGAAGAAAAATGGCGGATCAGCTCACGGACGATCAGACC
TCTGAGTTCAAAGAGGCCTTCAGCTTGTTTGACAAGGATGGCGACGGTTG
CATTACCACCAAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACC
CCACTGAGGCTGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGT
AATGGAACTATTGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGAT
GAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCG
ACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATG
ACAAACCTAGGAGAGAAACTTACTGATGAAGAAGTTGATGAGATGATAAG
GGAAGCTGATGTTGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCA
AGGTTATGATGGCCAAGTAATGACCCCAACCCACCAATACTTATAAAATG
GGTTGACTAAATTATAAAGGGATTCCTAGTTTTCTCTTTTACAATTTTTA
ATTTGATAGTCATGAGGGTCAGGCTAAAGGAAGCAATGGTCTTTTAATGG
TGATGGGCCTGATGGTGTAGGAAGAATGTTGTCTCCCTCGTCAATATGTC
TTGTGACTCGCAAAACTTTTCGGTTTTTATTATTTTAGTTGTTCTGCTGT
TCTGCAAAAAAAAAAAAA
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